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Package 477/609HostnameOS / ArchBUILDCHECKBUILD BIN
RBGL 1.34.0
Bioconductor Package Maintainer
Snapshot Date: 2013-03-24 16:21:20 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_11/madman/Rpacks/RBGL
Last Changed Rev: 70050 / Revision: 74773
Last Changed Date: 2012-10-01 15:16:24 -0700 (Mon, 01 Oct 2012)
lamb1 Linux (openSUSE 12.1) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
perceval Mac OS X Leopard (10.5.8) / i386  OK [ WARNINGS ] OK 

Summary

Package: RBGL
Version: 1.34.0
Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch RBGL_1.34.0.tar.gz
StartedAt: 2013-03-25 00:58:08 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 01:01:01 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 172.8 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: RBGL.Rcheck
Warnings: 1

Command output

* using log directory '/Users/biocbuild/bbs-2.11-bioc/meat/RBGL.Rcheck'
* using R version 2.15.3 (2013-03-01)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'RBGL/DESCRIPTION' ... OK
* this is package 'RBGL' version '1.34.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'RBGL' can be installed ... WARNING
Found the following significant warnings:
  rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' is used uninitialized in this function
  rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' is used uninitialized in this function
  rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' is used uninitialized in this function
  rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' is used uninitialized in this function
  rbgl_trimmed_boost_1_49_0/boost/graph/dijkstra_shortest_paths.hpp:119: warning: 'dvis' is used uninitialized in this function
See '/Users/biocbuild/bbs-2.11-bioc/meat/RBGL.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
See
  '/Users/biocbuild/bbs-2.11-bioc/meat/RBGL.Rcheck/00check.log'
for details.

RBGL.Rcheck/00install.out:

* installing *source* package 'RBGL' ...
untarring boost include tree...
** libs
*** arch - i386
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c bbc.cpp -o bbc.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from bbc.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from bbc.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c cliques.cpp -o cliques.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from cliques.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from cliques.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c clusteringCoef.cpp -o clusteringCoef.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from clusteringCoef.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from clusteringCoef.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c dominatorTree.cpp -o dominatorTree.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from dominatorTree.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from dominatorTree.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c edmonds_optimum_branching.cpp -o edmonds_optimum_branching.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from edmonds_optimum_branching.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from edmonds_optimum_branching.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c hcs.cpp -o hcs.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from hcs.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from hcs.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp: In function 'typename boost::graph_traits<G>::edges_size_type boost::min_cut(VertexListGraph&, OutputIterator, OutputIterator) [with VertexListGraph = const R_adjacency_list<boost::undirectedS, double>, OutputIterator = std::back_insert_iterator<std::vector<long unsigned int, std::allocator<long unsigned int> > >]':
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/edge_connectivity.hpp:32: warning: 'p' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/edge_connectivity.hpp:32: note: 'p' was declared here
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c incrConnComp.cpp -o incrConnComp.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from incrConnComp.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from incrConnComp.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
incrConnComp.cpp: In function 'SEXPREC* BGL_incr_comp_internal(SEXPREC*, SEXPREC*, SEXPREC*, E_IC_METHOD)':
incrConnComp.cpp:74: warning: unused variable 'child_index'
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c interfaces.cpp -o interfaces.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from interfaces.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from interfaces.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp: In function 'typename boost::graph_traits<G>::degree_size_type boost::edge_connectivity(VertexListGraph&, OutputIterator) [with VertexListGraph = Graph_ud, OutputIterator = std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int> > > >]':
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/edge_connectivity.hpp:32: warning: 'p' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/edge_connectivity.hpp:32: note: 'p' was declared here
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c minST.cpp -o minST.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from minST.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from minST.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c mincut.cpp -o mincut.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from mincut.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from mincut.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
rbgl_trimmed_boost_1_49_0/boost/graph/push_relabel_max_flow.hpp: In member function 'void boost::detail::push_relabel<Graph, EdgeCapacityMap, ResidualCapacityEdgeMap, ReverseEdgeMap, VertexIndexMap, FlowValue>::discharge(typename boost::graph_traits<Graph>::vertex_descriptor) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >, boost::no_property, boost::listS>, EdgeCapacityMap = boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, long unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >, boost::edge_capacity_t>, ResidualCapacityEdgeMap = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, long unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >, boost::edge_residual_capacity_t>, ReverseEdgeMap = boost::adj_list_edge_property_map<boost::directed_tag, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, const boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>&, long unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >, boost::edge_reverse_t>, VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::no_property, long unsigned int>, FlowValue = double]':
rbgl_trimmed_boost_1_49_0/boost/graph/push_relabel_max_flow.hpp:347: warning: 'min_edge_iter.boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::sep_<long unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > > >*, std::vector<boost::detail::sep_<long unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > > >, std::allocator<boost::detail::sep_<long unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > > > > > >, long unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, int>::m_src' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/push_relabel_max_flow.hpp:347: note: 'min_edge_iter.boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::sep_<long unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > > >*, std::vector<boost::detail::sep_<long unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > > >, std::allocator<boost::detail::sep_<long unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > > > > > >, long unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, int>::m_src' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp: In function 'SEXPREC* BGL_max_flow_internal(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, E_MF_METHOD)':
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp: In function 'typename boost::graph_traits<G>::edges_size_type boost::min_cut(VertexListGraph&, OutputIterator, OutputIterator) [with VertexListGraph = Graph_ud, OutputIterator = std::back_insert_iterator<std::vector<long unsigned int, std::allocator<long unsigned int> > >]':
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/edge_connectivity.hpp:32: warning: 'p' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/edge_connectivity.hpp:32: note: 'p' was declared here
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c ordering.cpp -o ordering.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from ordering.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from ordering.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/detail/sparse_ordering.hpp:25,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/cuthill_mckee_ordering.hpp:15,
                 from ordering.cpp:3:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:60:1: warning: "BGL_FORALL_VERTICES_T" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/isomorphism.hpp:22,
                 from ordering.cpp:2:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:60:1: warning: this is the location of the previous definition
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/detail/sparse_ordering.hpp:25,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/cuthill_mckee_ordering.hpp:15,
                 from ordering.cpp:3:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:76:1: warning: "BGL_FORALL_EDGES_T" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/isomorphism.hpp:22,
                 from ordering.cpp:2:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:76:1: warning: this is the location of the previous definition
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/detail/sparse_ordering.hpp:25,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/cuthill_mckee_ordering.hpp:15,
                 from ordering.cpp:3:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:92:1: warning: "BGL_FORALL_ADJ_T" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/isomorphism.hpp:22,
                 from ordering.cpp:2:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:92:1: warning: this is the location of the previous definition
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c planar.cpp -o planar.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from planar.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from planar.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_utility.hpp:471,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/biconnected_components.hpp:22,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/make_biconnected_planar.hpp:13,
                 from planar.cpp:9:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:60:1: warning: "BGL_FORALL_VERTICES_T" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/isomorphism.hpp:22,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/is_kuratowski_subgraph.hpp:16,
                 from planar.cpp:7:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:60:1: warning: this is the location of the previous definition
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_utility.hpp:471,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/biconnected_components.hpp:22,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/make_biconnected_planar.hpp:13,
                 from planar.cpp:9:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:76:1: warning: "BGL_FORALL_EDGES_T" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/isomorphism.hpp:22,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/is_kuratowski_subgraph.hpp:16,
                 from planar.cpp:7:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:76:1: warning: this is the location of the previous definition
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_utility.hpp:471,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/biconnected_components.hpp:22,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/make_biconnected_planar.hpp:13,
                 from planar.cpp:9:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:92:1: warning: "BGL_FORALL_ADJ_T" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/isomorphism.hpp:22,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/is_kuratowski_subgraph.hpp:16,
                 from planar.cpp:7:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:92:1: warning: this is the location of the previous definition
planar.cpp: In function 'SEXPREC* planarFaceTraversal(SEXPREC*, SEXPREC*, SEXPREC*)':
planar.cpp:161: warning: comparison between signed and unsigned integer expressions
planar.cpp:165: warning: comparison between signed and unsigned integer expressions
planar.cpp: In function 'SEXPREC* planarCanonicalOrdering(SEXPREC*, SEXPREC*, SEXPREC*)':
planar.cpp:256: warning: comparison between signed and unsigned integer expressions
planar.cpp: In function 'SEXPREC* isStraightLineDrawing(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
planar.cpp:369: warning: comparison between signed and unsigned integer expressions
planar.cpp: In function 'SEXPREC* isKuratowskiSubgraph(SEXPREC*, SEXPREC*, SEXPREC*)':
planar.cpp:461: warning: unused variable 'i'
rbgl_trimmed_boost_1_49_0/boost/graph/max_cardinality_matching.hpp: In member function 'bool boost::edmonds_augmenting_path_finder<Graph, MateMap, VertexIndexMap>::augment_matching() [with Graph = R_adjacency_list<boost::undirectedS, int>, MateMap = long unsigned int*, VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, long unsigned int>]':
rbgl_trimmed_boost_1_49_0/boost/graph/max_cardinality_matching.hpp:231: warning: 'w' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/max_cardinality_matching.hpp:231: warning: 'v' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/planar_detail/boyer_myrvold_impl.hpp: In member function 'void boost::boyer_myrvold_impl<Graph, VertexIndexMap, StoreOldHandlesPolicy, StoreEmbeddingPolicy>::extract_kuratowski_subgraph(OutputIterator, EdgeIndexMap) [with OutputIterator = std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int> > > >, EdgeIndexMap = boost::adj_list_edge_property_map<boost::undirected_tag, int, int&, long unsigned int, boost::property<boost::edge_index_t, int, boost::no_property>, boost::edge_index_t>, Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::no_property>, boost::property<boost::edge_index_t, int, boost::no_property>, boost::no_property, boost::listS>, VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::no_property>, long unsigned int>, StoreOldHandlesPolicy = boost::graph::detail::store_old_handles, StoreEmbeddingPolicy = boost::graph::detail::no_embedding]':
rbgl_trimmed_boost_1_49_0/boost/graph/planar_detail/boyer_myrvold_impl.hpp:1279: warning: 'previous_vertex' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/planar_detail/boyer_myrvold_impl.hpp:1238: warning: 'bicomp_root' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/planar_detail/boyer_myrvold_impl.hpp:1237: warning: 'z' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/chrobak_payne_drawing.hpp: In function 'void boost::chrobak_payne_straight_line_drawing(const Graph&, PlanarEmbedding, ForwardIterator, ForwardIterator, GridPositionMap, VertexIndexMap) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::no_property>, boost::property<boost::edge_index_t, int, boost::no_property>, boost::no_property, boost::listS>, PlanarEmbedding = boost::iterator_property_map<__gnu_cxx::__normal_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int> > >*, std::vector<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int> > >, std::allocator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int> > > > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::no_property>, long unsigned int>, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int> > >, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int> > >&>, ForwardIterator = __gnu_cxx::__normal_iterator<long unsigned int*, std::vector<long unsigned int, std::allocator<long unsigned int> > >, GridPositionMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<coord_t*, std::vector<coord_t, std::allocator<coord_t> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::no_property>, long unsigned int>, coord_t, coord_t&>, VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::no_property>, long unsigned int>]':
rbgl_trimmed_boost_1_49_0/boost/graph/chrobak_payne_drawing.hpp:219: warning: 'next_to_rightmost' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/planar_canonical_ordering.hpp: In function 'void boost::planar_canonical_ordering(const Graph&, PlanarEmbedding, OutputIterator, VertexIndexMap) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::no_property>, boost::property<boost::edge_index_t, int, boost::no_property>, boost::no_property, boost::listS>, PlanarEmbedding = boost::iterator_property_map<__gnu_cxx::__normal_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int> > >*, std::vector<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int> > >, std::allocator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int> > > > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::no_property>, long unsigned int>, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int> > >, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int> > >&>, OutputIterator = std::back_insert_iterator<std::vector<long unsigned int, std::allocator<long unsigned int> > >, VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::no_property>, long unsigned int>]':
rbgl_trimmed_boost_1_49_0/boost/graph/planar_canonical_ordering.hpp:68: warning: 'second_vertex' may be used uninitialized in this function
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c shortestPath.cpp -o shortestPath.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from shortestPath.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from shortestPath.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
rbgl_trimmed_boost_1_49_0/boost/graph/dijkstra_shortest_paths.hpp: In function 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, const BinaryPredicate&, const BinaryFunction&, const Infinity&, DistanceZero) [with VertexAndEdgeListGraph = R_adjacency_list<boost::directedS, double>, DistanceMatrix = Basic2DMatrix<double>, VertexID = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, long unsigned int>, Weight = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, BinaryPredicate = std::less<double>, BinaryFunction = boost::closed_plus<double>, Infinity = double, DistanceZero = double]':
rbgl_trimmed_boost_1_49_0/boost/graph/dijkstra_shortest_paths.hpp:119: warning: 'dvis' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/johnson_all_pairs_shortest.hpp:119: note: 'dvis' was declared here
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c sna.cpp -o sna.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from sna.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from sna.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
rbgl_trimmed_boost_1_49_0/boost/graph/dijkstra_shortest_paths.hpp: In function 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, const BinaryPredicate&, const BinaryFunction&, const Infinity&, DistanceZero) [with VertexAndEdgeListGraph = R_adjacency_list<boost::undirectedS, double>, DistanceMatrix = Basic2DMatrix<double>, VertexID = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, long unsigned int>, Weight = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, BinaryPredicate = std::less<double>, BinaryFunction = boost::closed_plus<double>, Infinity = double, DistanceZero = double]':
rbgl_trimmed_boost_1_49_0/boost/graph/dijkstra_shortest_paths.hpp:119: warning: 'dvis' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/johnson_all_pairs_shortest.hpp:119: note: 'dvis' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp: In function 'SEXPREC* lambdaSets(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' was declared here
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c transitive_closure.cpp -o transitive_closure.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/depth_first_search.hpp:18,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/strong_components.hpp:17,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/transitive_closure.hpp:18,
                 from transitive_closure.cpp:16:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/depth_first_search.hpp:18,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/strong_components.hpp:17,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/transitive_closure.hpp:18,
                 from transitive_closure.cpp:16:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c wavefront.cpp -o wavefront.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from wavefront.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from wavefront.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
g++ -arch i386 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o RBGL.so bbc.o cliques.o clusteringCoef.o dominatorTree.o edmonds_optimum_branching.o hcs.o incrConnComp.o interfaces.o minST.o mincut.o ordering.o planar.o shortestPath.o sna.o transitive_closure.o wavefront.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/RBGL.Rcheck/RBGL/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'RBGL.Rnw' 
** testing if installed package can be loaded

* DONE (RBGL)

RBGL.Rcheck/RBGL-Ex.timings:

nameusersystemelapsed
FileDep0.7760.0370.820
astarSearch0.0120.0030.014
bandwidth0.0190.0030.023
bccluster0.0140.0030.016
bellman.ford.sp0.0140.0020.016
betweenness0.0110.0020.013
bfs0.0200.0040.025
biConnComp0.0120.0020.014
chrobakPayneStraightLineDrawing0.0130.0010.014
clusteringCoef0.0160.0020.018
clusteringCoefAppr0.0140.0030.017
coloring0.0080.0020.011
connectedComp0.0240.0030.101
dag.sp0.0120.0020.015
dijkstra.sp0.0330.0050.042
dominatorTree0.0090.0040.024
edgeConn0.0110.0030.020
edmondsMaxCardinalityMatching0.0210.0010.021
edmondsOptimumBranching0.0120.0010.012
extractPath0.0070.0010.008
floyd.warshall.all.pairs.sp0.0110.0020.023
gprofile0.0080.0020.014
graphGenerator0.0010.0000.001
highlyConnSG0.0130.0020.015
incrConnComp0.0110.0030.014
is.triangulated0.0180.0040.022
isKuratowskiSubgraph0.0150.0000.015
isStraightLineDrawing0.0140.0000.014
isomorphism0.0180.0030.021
johnson.all.pairs.sp0.0100.0020.013
kCliques0.0100.0020.011
kCores0.0590.0040.063
lambdaSets0.0140.0020.017
layout0.0000.0010.000
makeBiconnectedPlanar0.0220.0010.023
makeConnected0.0120.0000.013
makeMaximalPlanar0.0160.0010.016
maxClique0.0270.0040.031
maxFlow0.0170.0020.020
minCut0.0090.0010.011
mstree.kruskal0.0330.0040.040
mstree.prim0.0100.0020.012
ordering0.0170.0020.020
planarCanonicalOrdering0.0110.0000.012
planarFaceTraversal0.0140.0010.015
removeSelfLoops0.0150.0020.017
separates0.0190.0030.033
sp.between0.0360.0030.039
strongComp0.0160.0020.018
transClosure0.0150.0020.017
transitivity0.0080.0020.010
tsort0.0240.0010.025
wavefront0.0100.0020.012