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Package 463/609HostnameOS / ArchBUILDCHECKBUILD BIN
PWMEnrich 1.2.0
Robert Stojnic
Snapshot Date: 2013-03-24 16:21:20 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_11/madman/Rpacks/PWMEnrich
Last Changed Rev: 70050 / Revision: 74773
Last Changed Date: 2012-10-01 15:16:24 -0700 (Mon, 01 Oct 2012)
lamb1 Linux (openSUSE 12.1) / x86_64 [ ERROR ] skipped 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  ERROR  skipped  skipped 
perceval Mac OS X Leopard (10.5.8) / i386  ERROR  skipped  skipped 

Summary

Package: PWMEnrich
Version: 1.2.0
Command: /home/biocbuild/bbs-2.11-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data PWMEnrich
StartedAt: 2013-03-24 22:30:41 -0700 (Sun, 24 Mar 2013)
EndedAt: 2013-03-24 22:31:02 -0700 (Sun, 24 Mar 2013)
EllapsedTime: 20.8 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

* checking for file ‘PWMEnrich/DESCRIPTION’ ... OK
* preparing ‘PWMEnrich’:
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: Biostrings
Loading required package: BiocGenerics

Attaching package: ‘BiocGenerics’

The following object(s) are masked from ‘package:stats’:

    xtabs

The following object(s) are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, cbind,
    colnames, duplicated, eval, get, intersect, lapply, mapply, mget,
    order, paste, pmax, pmax.int, pmin, pmin.int, rbind, rep.int,
    rownames, sapply, setdiff, table, tapply, union, unique

Loading required package: IRanges
Loading required package: grid
Warning in data(PWMLogn.dm3.jaspar.insects) :
  data set ‘PWMLogn.dm3.jaspar.insects’ not found
Warning: ‘read.DNAStringSet’ is deprecated.
Use ‘readDNAStringSet’ instead.
See help("Deprecated")

Error: processing vignette ‘PWMEnrich.Rnw’ failed with diagnostics:
 chunk 1 (label = simple) 
Error in motifEnrichment(sequences, PWMLogn.dm3.jaspar.insects) : 
  object ‘PWMLogn.dm3.jaspar.insects’ not found
Execution halted