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Package 417/609HostnameOS / ArchBUILDCHECKBUILD BIN
OLIN 1.36.0
Matthias Futschik
Snapshot Date: 2013-03-24 16:21:20 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_11/madman/Rpacks/OLIN
Last Changed Rev: 70050 / Revision: 74773
Last Changed Date: 2012-10-01 15:16:24 -0700 (Mon, 01 Oct 2012)
lamb1 Linux (openSUSE 12.1) / x86_64  OK  WARNINGS 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
perceval Mac OS X Leopard (10.5.8) / i386  OK [ WARNINGS ] OK 

Summary

Package: OLIN
Version: 1.36.0
Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch OLIN_1.36.0.tar.gz
StartedAt: 2013-03-25 00:39:32 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 00:41:14 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 102.1 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: OLIN.Rcheck
Warnings: 1

Command output

* using log directory '/Users/biocbuild/bbs-2.11-bioc/meat/OLIN.Rcheck'
* using R version 2.15.3 (2013-03-01)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'OLIN/DESCRIPTION' ... OK
* this is package 'OLIN' version '1.36.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'OLIN' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... WARNING
Found the following significant warnings:

  Warning: 'real' is deprecated.
  Warning: 'real' is deprecated.
  Warning: 'real' is deprecated.
Deprecated functions may be defunct as soon as of the next release of
R.
See ?Deprecated.
Examples with CPU or elapsed time > 5s
       user system elapsed
olin 33.733  3.333  38.181
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
See
  '/Users/biocbuild/bbs-2.11-bioc/meat/OLIN.Rcheck/00check.log'
for details.

OLIN.Rcheck/00install.out:

* installing *source* package 'OLIN' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'OLIN.Rnw' 
** testing if installed package can be loaded

* DONE (OLIN)

OLIN.Rcheck/OLIN-Ex.timings:

nameusersystemelapsed
anovaint0.2990.0610.364
anovapin0.2290.0400.273
anovaplate0.1740.0360.213
anovaspatial0.4880.0920.586
backgroundCorrect21.0210.2021.263
bas0.0970.0180.117
colorbar.mxy0.0810.0210.104
fdr.int0.0000.0000.001
fdr.int2000
fdr.spatial0.0010.0010.001
fdr.spatial2000
fgbg.visu0.1600.0390.209
ino0.4510.1190.579
lin1.3050.3131.629
m2v0.0940.0220.117
ma.matrix0.4220.0290.454
ma.vector0.5390.0440.586
mxy.abs.plot0.1810.0450.241
mxy.plot0.1270.0390.168
mxy2.plot0.0960.0240.121
oin1.6330.2952.004
olin33.733 3.33338.181
p.int0.0010.0000.000
p.int2000
p.spatial000
p.spatial20.0010.0000.000
sig.mask000
sigint.plot000
sigint.plot20.0010.0000.000
sigxy.plot000
sigxy.plot2000
v2m0.0760.0110.089