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Package 407/609HostnameOS / ArchBUILDCHECKBUILD BIN
NOISeq 1.1.5
Sonia Tarazona
Snapshot Date: 2013-03-24 16:21:20 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_11/madman/Rpacks/NOISeq
Last Changed Rev: 72955 / Revision: 74773
Last Changed Date: 2013-01-28 03:42:22 -0800 (Mon, 28 Jan 2013)
lamb1 Linux (openSUSE 12.1) / x86_64  OK  WARNINGS 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
perceval Mac OS X Leopard (10.5.8) / i386  OK [ WARNINGS ] OK 

Summary

Package: NOISeq
Version: 1.1.5
Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch NOISeq_1.1.5.tar.gz
StartedAt: 2013-03-25 00:37:13 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 00:39:01 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 108.0 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: NOISeq.Rcheck
Warnings: 1

Command output

* using log directory '/Users/biocbuild/bbs-2.11-bioc/meat/NOISeq.Rcheck'
* using R version 2.15.3 (2013-03-01)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'NOISeq/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'NOISeq' version '1.1.5'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'NOISeq' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Problems with news in 'inst/NEWS.Rd':
  inst/NEWS.Rd:25: unexpected TEXT ' ', expecting '{'
  Malformed NEWS.Rd file:
  Chunk starting
    {
  \item Fixed minor issues 
  }
  contains no \itemize.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
         user system elapsed
noiseq 34.214 22.961  62.171
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
See
  '/Users/biocbuild/bbs-2.11-bioc/meat/NOISeq.Rcheck/00check.log'
for details.

NOISeq.Rcheck/00install.out:

* installing *source* package 'NOISeq' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'NOISeq.Rnw' using 'UTF-8' 
** testing if installed package can be loaded

* DONE (NOISeq)

NOISeq.Rcheck/NOISeq-Ex.timings:

nameusersystemelapsed
DE.plot0.4690.0770.578
dat0.1160.0210.143
dat2save0.0570.0140.078
degenes0.0460.0080.062
explo.plot0.1200.0230.164
noiseq34.21422.96162.171
normalization0.0060.0010.007
readData0.1740.0250.199