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Package 295/609HostnameOS / ArchBUILDCHECKBUILD BIN
HTSanalyzeR 2.10.0
Xin Wang
Snapshot Date: 2013-03-24 16:21:20 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_11/madman/Rpacks/HTSanalyzeR
Last Changed Rev: 70050 / Revision: 74773
Last Changed Date: 2012-10-01 15:16:24 -0700 (Mon, 01 Oct 2012)
lamb1 Linux (openSUSE 12.1) / x86_64  OK [ OK ]
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
perceval Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: HTSanalyzeR
Version: 2.10.0
Command: /home/biocbuild/bbs-2.11-bioc/R/bin/R CMD check --no-vignettes --timings HTSanalyzeR_2.10.0.tar.gz
StartedAt: 2013-03-25 02:11:41 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 02:16:37 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 296.3 seconds
RetCode: 0
Status:  OK 
CheckDir: HTSanalyzeR.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.11-bioc/meat/HTSanalyzeR.Rcheck’
* using R version 2.15.3 (2013-03-01)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HTSanalyzeR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HTSanalyzeR’ version ‘2.10.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘HTSanalyzeR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

HTSanalyzeR.Rcheck/00install.out:

* installing *source* package ‘HTSanalyzeR’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘HTSanalyzeR-Vignette.Rnw’ 
** testing if installed package can be loaded

* DONE (HTSanalyzeR)

HTSanalyzeR.Rcheck/HTSanalyzeR-Ex.timings:

nameusersystemelapsed
FDRcollectionGsea1.4280.0201.449
GOGeneSets4.1650.0724.661
GSCA-class000
HTSanalyzeR4cellHTS20.0000.0000.001
KeggGeneSets3.8960.0524.115
NWA-class000
aggregatePvals0.0040.0040.005
analyze000
analyzeGeneSetCollections000
annotationConvertor1.0320.0241.070
appendGSTerms000
biogridDataDownload000
celAnnotationConvertor2.7680.0162.903
cellHTS2OutputStatTests0.0000.0000.001
changes000
collectionGsea0.8840.0040.888
data-KcViab0.9920.0161.059
drosoAnnotationConvertor1.7120.0121.745
duplicateRemover0.0040.0000.002
getTopGeneSets0.0000.0000.001
gseaPlots000
gseaScores0.0160.0000.016
hyperGeoTest3.9680.0244.075
interactome000
mammalAnnotationConvertor3.2970.0363.455
multiHyperGeoTest0.0080.0000.007
networkAnalysis000
networkPlot000
pairwiseGsea0.9240.0160.955
pairwiseGseaPlot0.0000.0000.001
pairwisePhenoMannWhit0.0080.0000.007
permutationPvalueCollectionGsea0.4240.0000.426
plotEnrichMap000
plotGSEA000
plotSubNet000
preprocess000
report000
reportAll000
summarize000
viewEnrichMap000
viewGSEA000
viewSubNet000
writeReportHTSA0.0000.0000.001