>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=survcomp.buildbin-libdir survcomp_1.6.0.tar.gz'
>>>>>>>
* installing *source* package 'survcomp' ...
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c concordance.index.c -o concordance.index.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c foo_mrmr_ensemble_surv.cpp -o foo_mrmr_ensemble_surv.o
foo_mrmr_ensemble_surv.cpp: In function 'double get_correlation_ensemble(double*, int*, int, int, int)':
foo_mrmr_ensemble_surv.cpp:12: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:22: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp: In function 'void build_mim_cIndex_subset(double*, double*, int*, int, int, int*, int, int*, int*, int*, double*, int*, double*, int*, int*, int*, int*)':
foo_mrmr_ensemble_surv.cpp:202: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:203: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:214: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:216: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:191: warning: unused variable 'msurv_x'
foo_mrmr_ensemble_surv.cpp:191: warning: unused variable 'ustrat_x'
foo_mrmr_ensemble_surv.cpp: In function 'void bootstrap_tree(tree > >&, tree > >&, double*, int*, int, int, int, int*, int*, double*, int*, double*, int*, double*, int*, int*, int*, int, int*)':
foo_mrmr_ensemble_surv.cpp:351: warning: unused variable 'cnt_back'
foo_mrmr_ensemble_surv.cpp:286: warning: unused variable 'nsub'
foo_mrmr_ensemble_surv.cpp: In function 'void bootstrap_mrmr(double&, double&, double*, int*, int, int, int, int, int, int, int, int*, int*, int*, double*, int*, double*, int*, double*, int*, int*, int*, int, int*)':
foo_mrmr_ensemble_surv.cpp:393: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:396: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:400: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:401: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:412: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:419: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:387: warning: unused variable 'mim'
foo_mrmr_ensemble_surv.cpp: In function 'double mrnet_onegene(double*, int, int, int*, int, int)':
foo_mrmr_ensemble_surv.cpp:448: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:439: warning: unused variable 'max_val'
foo_mrmr_ensemble_surv.cpp: In function 'int verify_equivalentset_nparents(tree > >&, tree > >::pre_order_iterator, tree > >::pre_order_iterator, tree > >&, int)':
foo_mrmr_ensemble_surv.cpp:467: warning: unused variable 'found'
foo_mrmr_ensemble_surv.cpp: In function 'void mrmr_ensemble_one_gene_remove(tree > >&, tree > >::pre_order_iterator, double*, int*, int, int, int, int, int, int, double, int*, int*, double*, int*, double*, int*, double*, int*, int*, int*, int, int*)':
foo_mrmr_ensemble_surv.cpp:593: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:596: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:597: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:604: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:646: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:654: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:657: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:661: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:578: warning: unused variable 'nsamples_boot'
foo_mrmr_ensemble_surv.cpp:578: warning: unused variable 'tmp_val_max_ind'
foo_mrmr_ensemble_surv.cpp:578: warning: unused variable 'prev_sel_tmp'
foo_mrmr_ensemble_surv.cpp:579: warning: unused variable 'vec_sort'
foo_mrmr_ensemble_surv.cpp: In function 'SEXPREC* mrmr_cIndex_ensemble_remove(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
foo_mrmr_ensemble_surv.cpp:785: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:819: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:833: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:838: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:842: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:800: warning: unused variable 'cnt2'
foo_mrmr_ensemble_surv.cpp:803: warning: unused variable 'rootdepth'
foo_mrmr_ensemble_surv.cpp:816: warning: unused variable 'ind'
foo_mrmr_ensemble_surv.cpp:732: warning: unused variable 'res_all'
foo_mrmr_ensemble_surv.cpp:732: warning: unused variable 'res_all2'
foo_mrmr_ensemble_surv.cpp:733: warning: unused variable 'vec_tmp'
tree.h: In static member function 'static int tree::depth(const tree::iterator_base&) [with T = int, tree_node_allocator = std::allocator >]':
foo_mrmr_ensemble_surv.cpp:250: instantiated from here
tree.h:1635: warning: statement has no effect
tree.h: In static member function 'static iter tree::parent(iter) [with iter = tree > >::pre_order_iterator, T = int, tree_node_allocator = std::allocator >]':
foo_mrmr_ensemble_surv.cpp:258: instantiated from here
tree.h:756: warning: statement has no effect
tree.h: In static member function 'static iter tree::parent(iter) [with iter = tree > >::pre_order_iterator, T = double, tree_node_allocator = std::allocator >]':
foo_mrmr_ensemble_surv.cpp:258: instantiated from here
tree.h:756: warning: statement has no effect
tree.h: In member function 'iter tree::erase(iter) [with iter = tree > >::pre_order_iterator, T = int, tree_node_allocator = std::allocator >]':
foo_mrmr_ensemble_surv.cpp:267: instantiated from here
tree.h:589: warning: statement has no effect
tree.h: In member function 'iter tree::erase(iter) [with iter = tree > >::pre_order_iterator, T = double, tree_node_allocator = std::allocator >]':
foo_mrmr_ensemble_surv.cpp:267: instantiated from here
tree.h:589: warning: statement has no effect
tree.h: In member function 'typename tree::pre_order_iterator& tree::pre_order_iterator::operator++() [with T = int, tree_node_allocator = std::allocator >]':
foo_mrmr_ensemble_surv.cpp:281: instantiated from here
tree.h:2046: warning: statement has no effect
tree.h: In member function 'typename tree::pre_order_iterator& tree::pre_order_iterator::operator++() [with T = double, tree_node_allocator = std::allocator >]':
foo_mrmr_ensemble_surv.cpp:281: instantiated from here
tree.h:2046: warning: statement has no effect
tree.h: In member function 'iter tree::erase(iter) [with iter = tree > >::leaf_iterator, T = double, tree_node_allocator = std::allocator >]':
foo_mrmr_ensemble_surv.cpp:560: instantiated from here
tree.h:589: warning: statement has no effect
tree.h: In member function 'iter tree::append_child(iter, const T&) [with iter = tree > >::pre_order_iterator, T = int, tree_node_allocator = std::allocator >]':
foo_mrmr_ensemble_surv.cpp:690: instantiated from here
tree.h:883: warning: statement has no effect
tree.h:884: warning: statement has no effect
tree.h: In member function 'iter tree::append_child(iter, const T&) [with iter = tree > >::pre_order_iterator, T = double, tree_node_allocator = std::allocator >]':
foo_mrmr_ensemble_surv.cpp:691: instantiated from here
tree.h:883: warning: statement has no effect
tree.h:884: warning: statement has no effect
tree.h: In member function 'typename tree::breadth_first_queued_iterator& tree::breadth_first_queued_iterator::operator++() [with T = int, tree_node_allocator = std::allocator >]':
foo_mrmr_ensemble_surv.cpp:808: instantiated from here
tree.h:2273: warning: statement has no effect
tree.h: In member function 'typename tree::pre_order_iterator& tree::pre_order_iterator::operator--() [with T = int, tree_node_allocator = std::allocator >]':
tree.h:2091: instantiated from 'typename tree::pre_order_iterator tree::pre_order_iterator::operator--(int) [with T = int, tree_node_allocator = std::allocator >]'
foo_mrmr_ensemble_surv.cpp:355: instantiated from here
tree.h:2065: warning: statement has no effect
tree.h: In member function 'typename tree::pre_order_iterator& tree::pre_order_iterator::operator--() [with T = double, tree_node_allocator = std::allocator >]':
tree.h:2091: instantiated from 'typename tree::pre_order_iterator tree::pre_order_iterator::operator--(int) [with T = double, tree_node_allocator = std::allocator >]'
foo_mrmr_ensemble_surv.cpp:355: instantiated from here
tree.h:2065: warning: statement has no effect
tree.h: In member function 'typename tree::leaf_iterator& tree::leaf_iterator::operator++() [with T = int, tree_node_allocator = std::allocator >]':
tree.h:2673: instantiated from 'typename tree::leaf_iterator tree::leaf_iterator::operator++(int) [with T = int, tree_node_allocator = std::allocator >]'
foo_mrmr_ensemble_surv.cpp:502: instantiated from here
tree.h:2636: warning: statement has no effect
tree.h: In member function 'typename tree::leaf_iterator& tree::leaf_iterator::operator++() [with T = double, tree_node_allocator = std::allocator >]':
tree.h:2673: instantiated from 'typename tree::leaf_iterator tree::leaf_iterator::operator++(int) [with T = double, tree_node_allocator = std::allocator >]'
foo_mrmr_ensemble_surv.cpp:526: instantiated from here
tree.h:2636: warning: statement has no effect
tree.h: In member function 'typename tree::leaf_iterator& tree::leaf_iterator::operator--() [with T = int, tree_node_allocator = std::allocator >]':
tree.h:2681: instantiated from 'typename tree::leaf_iterator tree::leaf_iterator::operator--(int) [with T = int, tree_node_allocator = std::allocator >]'
foo_mrmr_ensemble_surv.cpp:554: instantiated from here
tree.h:2657: warning: statement has no effect
tree.h: In member function 'typename tree::leaf_iterator& tree::leaf_iterator::operator--() [with T = double, tree_node_allocator = std::allocator >]':
tree.h:2681: instantiated from 'typename tree::leaf_iterator tree::leaf_iterator::operator--(int) [with T = double, tree_node_allocator = std::allocator >]'
foo_mrmr_ensemble_surv.cpp:554: instantiated from here
tree.h:2657: warning: statement has no effect
tree.h: In member function 'iter tree::replace(iter, const tree::iterator_base&) [with iter = tree > >::pre_order_iterator, T = int, tree_node_allocator = std::allocator >]':
tree.h:547: instantiated from 'void tree<T, tree_node_allocator>::copy_(const tree<T, tree_node_allocator>&) [with T = int, tree_node_allocator = std::allocator<tree_node_<int> >]'
tree.h:531: instantiated from 'tree<T, tree_node_allocator>::tree(const tree<T, tree_node_allocator>&) [with T = int, tree_node_allocator = std::allocator<tree_node_<int> >]'
foo_mrmr_ensemble_surv.cpp:611: instantiated from here
tree.h:1113: warning: statement has no effect
tree.h:547: instantiated from 'void tree<T, tree_node_allocator>::copy_(const tree<T, tree_node_allocator>&) [with T = int, tree_node_allocator = std::allocator<tree_node_<int> >]'
tree.h:531: instantiated from 'tree<T, tree_node_allocator>::tree(const tree<T, tree_node_allocator>&) [with T = int, tree_node_allocator = std::allocator<tree_node_<int> >]'
foo_mrmr_ensemble_surv.cpp:611: instantiated from here
tree.h:1153: warning: statement has no effect
tree.h:1162: warning: statement has no effect
foo_mrmr_ensemble_surv.cpp: In function 'SEXPREC* mrmr_cIndex_ensemble_remove(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
foo_mrmr_ensemble_surv.cpp:790: warning: 'x2' is used uninitialized in this function
foo_mrmr_ensemble_surv.cpp:740: warning: 'Rres' may be used uninitialized in this function
foo_mrmr_ensemble_surv.cpp:815: warning: 'res_old' may be used uninitialized in this function
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c foo_mrmr_surv.cpp -o foo_mrmr_surv.o
foo_mrmr_surv.cpp: In function 'double get_correlation(double*, int*, int, int, int)':
foo_mrmr_surv.cpp:12: warning: comparison between signed and unsigned integer expressions
foo_mrmr_surv.cpp:22: warning: comparison between signed and unsigned integer expressions
foo_mrmr_surv.cpp: In function 'void build_mim_subset(double*, double*, int*, int, int, int*, int)':
foo_mrmr_surv.cpp:49: warning: comparison between signed and unsigned integer expressions
foo_mrmr_surv.cpp:50: warning: comparison between signed and unsigned integer expressions
foo_mrmr_surv.cpp:56: warning: comparison between signed and unsigned integer expressions
foo_mrmr_surv.cpp:58: warning: comparison between signed and unsigned integer expressions
foo_mrmr_surv.cpp: In function 'SEXPREC* mrmr_cIndex(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
foo_mrmr_surv.cpp:300: warning: comparison between signed and unsigned integer expressions
foo_mrmr_surv.cpp:340: warning: comparison between signed and unsigned integer expressions
g++ -arch i386 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o survcomp.so concordance.index.o foo_mrmr_ensemble_surv.o foo_mrmr_surv.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.10-bioc/meat/survcomp.buildbin-libdir/survcomp/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
'survcomp.Rnw'
** testing if installed package can be loaded
* DONE (survcomp)
>>>>>>>
>>>>>>> FIXING LINKS FOR survcomp.buildbin-libdir/survcomp/libs/i386/survcomp.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "survcomp.buildbin-libdir/survcomp/libs/i386/survcomp.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "survcomp.buildbin-libdir/survcomp/libs/i386/survcomp.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "survcomp.buildbin-libdir/survcomp/libs/i386/survcomp.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "survcomp.buildbin-libdir/survcomp/libs/i386/survcomp.so"
>>>>>>>
>>>>>>> INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --no-multiarch --no-test-load --library=survcomp.buildbin-libdir --libs-only survcomp_1.6.0.tar.gz'
>>>>>>>
* installing *source* package 'survcomp' ...
** libs
*** arch - x86_64
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/x86_64 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c concordance.index.c -o concordance.index.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/x86_64 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c foo_mrmr_ensemble_surv.cpp -o foo_mrmr_ensemble_surv.o
foo_mrmr_ensemble_surv.cpp: In function 'double get_correlation_ensemble(double*, int*, int, int, int)':
foo_mrmr_ensemble_surv.cpp:12: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:22: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp: In function 'void build_mim_cIndex_subset(double*, double*, int*, int, int, int*, int, int*, int*, int*, double*, int*, double*, int*, int*, int*, int*)':
foo_mrmr_ensemble_surv.cpp:202: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:203: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:214: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:216: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:191: warning: unused variable 'msurv_x'
foo_mrmr_ensemble_surv.cpp:191: warning: unused variable 'ustrat_x'
foo_mrmr_ensemble_surv.cpp: In function 'void bootstrap_tree(tree > >&, tree > >&, double*, int*, int, int, int, int*, int*, double*, int*, double*, int*, double*, int*, int*, int*, int, int*)':
foo_mrmr_ensemble_surv.cpp:351: warning: unused variable 'cnt_back'
foo_mrmr_ensemble_surv.cpp:286: warning: unused variable 'nsub'
foo_mrmr_ensemble_surv.cpp: In function 'void bootstrap_mrmr(double&, double&, double*, int*, int, int, int, int, int, int, int, int*, int*, int*, double*, int*, double*, int*, double*, int*, int*, int*, int, int*)':
foo_mrmr_ensemble_surv.cpp:393: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:396: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:400: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:401: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:412: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:419: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:387: warning: unused variable 'mim'
foo_mrmr_ensemble_surv.cpp: In function 'double mrnet_onegene(double*, int, int, int*, int, int)':
foo_mrmr_ensemble_surv.cpp:448: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:439: warning: unused variable 'max_val'
foo_mrmr_ensemble_surv.cpp: In function 'int verify_equivalentset_nparents(tree > >&, tree > >::pre_order_iterator, tree > >::pre_order_iterator, tree > >&, int)':
foo_mrmr_ensemble_surv.cpp:467: warning: unused variable 'found'
foo_mrmr_ensemble_surv.cpp: In function 'void mrmr_ensemble_one_gene_remove(tree > >&, tree > >::pre_order_iterator, double*, int*, int, int, int, int, int, int, double, int*, int*, double*, int*, double*, int*, double*, int*, int*, int*, int, int*)':
foo_mrmr_ensemble_surv.cpp:593: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:596: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:597: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:604: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:646: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:654: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:657: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:661: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:578: warning: unused variable 'nsamples_boot'
foo_mrmr_ensemble_surv.cpp:578: warning: unused variable 'tmp_val_max_ind'
foo_mrmr_ensemble_surv.cpp:578: warning: unused variable 'prev_sel_tmp'
foo_mrmr_ensemble_surv.cpp:579: warning: unused variable 'vec_sort'
foo_mrmr_ensemble_surv.cpp: In function 'SEXPREC* mrmr_cIndex_ensemble_remove(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
foo_mrmr_ensemble_surv.cpp:785: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:819: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:833: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:838: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:842: warning: comparison between signed and unsigned integer expressions
foo_mrmr_ensemble_surv.cpp:800: warning: unused variable 'cnt2'
foo_mrmr_ensemble_surv.cpp:803: warning: unused variable 'rootdepth'
foo_mrmr_ensemble_surv.cpp:816: warning: unused variable 'ind'
foo_mrmr_ensemble_surv.cpp:732: warning: unused variable 'res_all'
foo_mrmr_ensemble_surv.cpp:732: warning: unused variable 'res_all2'
foo_mrmr_ensemble_surv.cpp:733: warning: unused variable 'vec_tmp'
tree.h: In static member function 'static int tree::depth(const tree::iterator_base&) [with T = int, tree_node_allocator = std::allocator >]':
foo_mrmr_ensemble_surv.cpp:250: instantiated from here
tree.h:1635: warning: statement has no effect
tree.h: In static member function 'static iter tree::parent(iter) [with iter = tree > >::pre_order_iterator, T = int, tree_node_allocator = std::allocator >]':
foo_mrmr_ensemble_surv.cpp:258: instantiated from here
tree.h:756: warning: statement has no effect
tree.h: In static member function 'static iter tree::parent(iter) [with iter = tree > >::pre_order_iterator, T = double, tree_node_allocator = std::allocator >]':
foo_mrmr_ensemble_surv.cpp:258: instantiated from here
tree.h:756: warning: statement has no effect
tree.h: In member function 'iter tree::erase(iter) [with iter = tree > >::pre_order_iterator, T = int, tree_node_allocator = std::allocator >]':
foo_mrmr_ensemble_surv.cpp:267: instantiated from here
tree.h:589: warning: statement has no effect
tree.h: In member function 'iter tree::erase(iter) [with iter = tree > >::pre_order_iterator, T = double, tree_node_allocator = std::allocator >]':
foo_mrmr_ensemble_surv.cpp:267: instantiated from here
tree.h:589: warning: statement has no effect
tree.h: In member function 'typename tree::pre_order_iterator& tree::pre_order_iterator::operator++() [with T = int, tree_node_allocator = std::allocator >]':
foo_mrmr_ensemble_surv.cpp:281: instantiated from here
tree.h:2046: warning: statement has no effect
tree.h: In member function 'typename tree::pre_order_iterator& tree::pre_order_iterator::operator++() [with T = double, tree_node_allocator = std::allocator >]':
foo_mrmr_ensemble_surv.cpp:281: instantiated from here
tree.h:2046: warning: statement has no effect
tree.h: In member function 'iter tree::erase(iter) [with iter = tree > >::leaf_iterator, T = double, tree_node_allocator = std::allocator >]':
foo_mrmr_ensemble_surv.cpp:560: instantiated from here
tree.h:589: warning: statement has no effect
tree.h: In member function 'iter tree::append_child(iter, const T&) [with iter = tree > >::pre_order_iterator, T = int, tree_node_allocator = std::allocator >]':
foo_mrmr_ensemble_surv.cpp:690: instantiated from here
tree.h:883: warning: statement has no effect
tree.h:884: warning: statement has no effect
tree.h: In member function 'iter tree::append_child(iter, const T&) [with iter = tree > >::pre_order_iterator, T = double, tree_node_allocator = std::allocator >]':
foo_mrmr_ensemble_surv.cpp:691: instantiated from here
tree.h:883: warning: statement has no effect
tree.h:884: warning: statement has no effect
tree.h: In member function 'typename tree::breadth_first_queued_iterator& tree::breadth_first_queued_iterator::operator++() [with T = int, tree_node_allocator = std::allocator >]':
foo_mrmr_ensemble_surv.cpp:808: instantiated from here
tree.h:2273: warning: statement has no effect
tree.h: In member function 'typename tree::pre_order_iterator& tree::pre_order_iterator::operator--() [with T = int, tree_node_allocator = std::allocator >]':
tree.h:2091: instantiated from 'typename tree::pre_order_iterator tree::pre_order_iterator::operator--(int) [with T = int, tree_node_allocator = std::allocator >]'
foo_mrmr_ensemble_surv.cpp:355: instantiated from here
tree.h:2065: warning: statement has no effect
tree.h: In member function 'typename tree::pre_order_iterator& tree::pre_order_iterator::operator--() [with T = double, tree_node_allocator = std::allocator >]':
tree.h:2091: instantiated from 'typename tree::pre_order_iterator tree::pre_order_iterator::operator--(int) [with T = double, tree_node_allocator = std::allocator >]'
foo_mrmr_ensemble_surv.cpp:355: instantiated from here
tree.h:2065: warning: statement has no effect
tree.h: In member function 'typename tree::leaf_iterator& tree::leaf_iterator::operator++() [with T = int, tree_node_allocator = std::allocator >]':
tree.h:2673: instantiated from 'typename tree::leaf_iterator tree::leaf_iterator::operator++(int) [with T = int, tree_node_allocator = std::allocator >]'
foo_mrmr_ensemble_surv.cpp:502: instantiated from here
tree.h:2636: warning: statement has no effect
tree.h: In member function 'typename tree::leaf_iterator& tree::leaf_iterator::operator++() [with T = double, tree_node_allocator = std::allocator >]':
tree.h:2673: instantiated from 'typename tree::leaf_iterator tree::leaf_iterator::operator++(int) [with T = double, tree_node_allocator = std::allocator >]'
foo_mrmr_ensemble_surv.cpp:526: instantiated from here
tree.h:2636: warning: statement has no effect
tree.h: In member function 'typename tree::leaf_iterator& tree::leaf_iterator::operator--() [with T = int, tree_node_allocator = std::allocator >]':
tree.h:2681: instantiated from 'typename tree::leaf_iterator tree::leaf_iterator::operator--(int) [with T = int, tree_node_allocator = std::allocator >]'
foo_mrmr_ensemble_surv.cpp:554: instantiated from here
tree.h:2657: warning: statement has no effect
tree.h: In member function 'typename tree::leaf_iterator& tree::leaf_iterator::operator--() [with T = double, tree_node_allocator = std::allocator >]':
tree.h:2681: instantiated from 'typename tree::leaf_iterator tree::leaf_iterator::operator--(int) [with T = double, tree_node_allocator = std::allocator >]'
foo_mrmr_ensemble_surv.cpp:554: instantiated from here
tree.h:2657: warning: statement has no effect
tree.h: In member function 'iter tree::replace(iter, const tree::iterator_base&) [with iter = tree > >::pre_order_iterator, T = int, tree_node_allocator = std::allocator >]':
tree.h:547: instantiated from 'void tree<T, tree_node_allocator>::copy_(const tree<T, tree_node_allocator>&) [with T = int, tree_node_allocator = std::allocator<tree_node_<int> >]'
tree.h:531: instantiated from 'tree<T, tree_node_allocator>::tree(const tree<T, tree_node_allocator>&) [with T = int, tree_node_allocator = std::allocator<tree_node_<int> >]'
foo_mrmr_ensemble_surv.cpp:611: instantiated from here
tree.h:1113: warning: statement has no effect
tree.h:547: instantiated from 'void tree<T, tree_node_allocator>::copy_(const tree<T, tree_node_allocator>&) [with T = int, tree_node_allocator = std::allocator<tree_node_<int> >]'
tree.h:531: instantiated from 'tree<T, tree_node_allocator>::tree(const tree<T, tree_node_allocator>&) [with T = int, tree_node_allocator = std::allocator<tree_node_<int> >]'
foo_mrmr_ensemble_surv.cpp:611: instantiated from here
tree.h:1153: warning: statement has no effect
tree.h:1162: warning: statement has no effect
foo_mrmr_ensemble_surv.cpp: In function 'SEXPREC* mrmr_cIndex_ensemble_remove(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
foo_mrmr_ensemble_surv.cpp:790: warning: 'x2' is used uninitialized in this function
foo_mrmr_ensemble_surv.cpp:740: warning: 'Rres' may be used uninitialized in this function
foo_mrmr_ensemble_surv.cpp:815: warning: 'res_old' may be used uninitialized in this function
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/x86_64 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c foo_mrmr_surv.cpp -o foo_mrmr_surv.o
foo_mrmr_surv.cpp: In function 'double get_correlation(double*, int*, int, int, int)':
foo_mrmr_surv.cpp:12: warning: comparison between signed and unsigned integer expressions
foo_mrmr_surv.cpp:22: warning: comparison between signed and unsigned integer expressions
foo_mrmr_surv.cpp: In function 'void build_mim_subset(double*, double*, int*, int, int, int*, int)':
foo_mrmr_surv.cpp:49: warning: comparison between signed and unsigned integer expressions
foo_mrmr_surv.cpp:50: warning: comparison between signed and unsigned integer expressions
foo_mrmr_surv.cpp:56: warning: comparison between signed and unsigned integer expressions
foo_mrmr_surv.cpp:58: warning: comparison between signed and unsigned integer expressions
foo_mrmr_surv.cpp: In function 'SEXPREC* mrmr_cIndex(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
foo_mrmr_surv.cpp:300: warning: comparison between signed and unsigned integer expressions
foo_mrmr_surv.cpp:340: warning: comparison between signed and unsigned integer expressions
g++ -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o survcomp.so concordance.index.o foo_mrmr_ensemble_surv.o foo_mrmr_surv.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.10-bioc/meat/survcomp.buildbin-libdir/survcomp/libs/x86_64
* DONE (survcomp)
>>>>>>>
>>>>>>> FIXING LINKS FOR survcomp.buildbin-libdir/survcomp/libs/x86_64/survcomp.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "survcomp.buildbin-libdir/survcomp/libs/x86_64/survcomp.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "survcomp.buildbin-libdir/survcomp/libs/x86_64/survcomp.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "survcomp.buildbin-libdir/survcomp/libs/x86_64/survcomp.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "survcomp.buildbin-libdir/survcomp/libs/x86_64/survcomp.so"