Package: plateCore

Version: 1.14.0

Command: /home/biocbuild/bbs-2.10-bioc/R/bin/R CMD check --no-vignettes --timings plateCore_1.14.0.tar.gz

StartedAt: 2012-09-24 02:57:47 -0700 (Mon, 24 Sep 2012)

EndedAt: 2012-09-24 03:01:03 -0700 (Mon, 24 Sep 2012)

EllapsedTime: 196.2 seconds

RetCode: 0

Status:  OK

CheckDir: plateCore.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.10-bioc/meat/plateCore.Rcheck’
* using R version 2.15.1 (2012-06-22)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘plateCore/DESCRIPTION’ ... OK
* this is package ‘plateCore’ version ‘1.14.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘plateCore’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
panel.xyplot.flowPlate: warning in filterBoundary(filter =
  filter[[nm]], parameters = c(channel.x.name, channel.y.name), frame =
  frames[[nm]]): partial argument match of 'filter' to 'filter.object'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/loc/home/biocbuild/bbs-2.10-bioc/meat/plateCore.Rcheck/00check.log’
for details.

* installing *source* package ‘plateCore’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘plateCoreVig.Rnw’ 
** testing if installed package can be loaded

* DONE (plateCore)

name	user	system	elapsed
Subset-methods	5.268	0.076	5.497
applyControlGates-methods	12.449	0.008	12.863
compensate-methods	4.924	0.016	5.049
compensationSet	0.148	0.008	0.162
densityplot-methods	1.644	0.020	1.699
fixAutoFl-methods	5.713	0.032	5.951
flowPlate-class	2.848	0.020	2.883
flowPlate-method	2.940	0.012	2.957
fpbind-methods	7.692	0.072	8.005
getGroups-methods	1.465	0.004	1.524
gutterPlot-methods	1.224	0.004	1.229
mfiPlot-methods	12.216	0.012	12.337
on-methods	9.009	0.012	9.198
panel.densityplot.flowPlate	1.764	0.016	1.816
panel.xyplot.flowPlate	1.628	0.004	1.663
plateCore-package	2.976	0.004	3.059
plateSet-methods	2.917	0.012	2.957
plotPlate-methods	3.644	0.004	3.743
prepanel.densityplot.flowPlate	1.636	0.000	1.639
prepanel.xyplot.flowPlate	1.340	0.016	1.391
setControlGates-methods	3.192	0.008	3.228
summaryStats-methods	13.053	0.016	13.109
wellAnnotation-methods	1.072	0.004	1.080
xyplot-methods	1.392	0.004	1.401