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Package 541/553HostnameOS / ArchBUILDCHECKBUILD BIN
VegaMC 2.0.0
Sandro Morganella
Snapshot Date: 2012-09-23 17:01:39 -0700 (Sun, 23 Sep 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_10/madman/Rpacks/VegaMC
Last Changed Rev: 66383 / Revision: 69725
Last Changed Date: 2012-06-03 10:30:04 -0700 (Sun, 03 Jun 2012)
lamb2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: VegaMC
Version: 2.0.0
Command: /home/biocbuild/bbs-2.10-bioc/R/bin/R CMD check --no-vignettes --timings VegaMC_2.0.0.tar.gz
StartedAt: 2012-09-24 04:07:34 -0700 (Mon, 24 Sep 2012)
EndedAt: 2012-09-24 04:10:26 -0700 (Mon, 24 Sep 2012)
EllapsedTime: 171.5 seconds
RetCode: 0
Status:  OK 
CheckDir: VegaMC.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.10-bioc/meat/VegaMC.Rcheck’
* using R version 2.15.1 (2012-06-22)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘VegaMC/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘VegaMC’ version ‘2.0.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘VegaMC’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  5.6Mb
  sub-directories of 1Mb or more:
    example   4.9Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/loc/home/biocbuild/bbs-2.10-bioc/meat/VegaMC.Rcheck/00check.log’
for details.

VegaMC.Rcheck/00install.out:

* installing *source* package ‘VegaMC’ ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.10-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c run_vegaMC.c -o run_vegaMC.o
run_vegaMC.c: In function ‘read_params’:
run_vegaMC.c:618:18: warning: unused variable ‘brkt’
run_vegaMC.c: In function ‘load_data’:
run_vegaMC.c:481:12: warning: ‘first_probe’ may be used uninitialized in this function
run_vegaMC.c:481:26: warning: ‘prev_probe’ may be used uninitialized in this function
run_vegaMC.c:498:20: warning: ‘position’ may be used uninitialized in this function
run_vegaMC.c:498:30: warning: ‘chr’ may be used uninitialized in this function
run_vegaMC.c: In function ‘call_VegaMC’:
run_vegaMC.c:373:18: warning: ‘first_seg’ may be used uninitialized in this function
run_vegaMC.c:373:30: warning: ‘prev_seg’ may be used uninitialized in this function
gcc -std=gnu99 -I/home/biocbuild/bbs-2.10-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c sort_data.c -o sort_data.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.10-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c vegaMC.c -o vegaMC.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o VegaMC.so run_vegaMC.o sort_data.o vegaMC.o -L/home/biocbuild/bbs-2.10-bioc/R/lib -lR
installing to /loc/home/biocbuild/bbs-2.10-bioc/meat/VegaMC.Rcheck/VegaMC/libs
** R
** inst
** preparing package for lazy loading
Warning: replacing previous import ‘density’ when loading ‘stats’
Warning: replacing previous import ‘residuals’ when loading ‘stats’
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘VegaMC.Rnw’ 
** testing if installed package can be loaded
Warning: replacing previous import ‘density’ when loading ‘stats’
Warning: replacing previous import ‘residuals’ when loading ‘stats’

* DONE (VegaMC)

VegaMC.Rcheck/VegaMC-Ex.timings:

nameusersystemelapsed
VegaMC-package0.1920.0280.218
sortData0.2360.0240.258
vegaMC-methods1.4560.0241.496