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Package 511/553HostnameOS / ArchBUILDCHECKBUILD BIN
SRAdb 1.10.0
Jack Zhu
Snapshot Date: 2012-09-23 17:01:39 -0700 (Sun, 23 Sep 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_10/madman/Rpacks/SRAdb
Last Changed Rev: 64678 / Revision: 69725
Last Changed Date: 2012-03-30 15:05:02 -0700 (Fri, 30 Mar 2012)
lamb2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: SRAdb
Version: 1.10.0
Command: /home/biocbuild/bbs-2.10-bioc/R/bin/R CMD check --no-vignettes --timings SRAdb_1.10.0.tar.gz
StartedAt: 2012-09-24 03:55:57 -0700 (Mon, 24 Sep 2012)
EndedAt: 2012-09-24 03:56:53 -0700 (Mon, 24 Sep 2012)
EllapsedTime: 55.8 seconds
RetCode: 0
Status:  OK 
CheckDir: SRAdb.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.10-bioc/meat/SRAdb.Rcheck’
* using R version 2.15.1 (2012-06-22)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SRAdb/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘SRAdb’ version ‘1.10.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘SRAdb’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

SRAdb.Rcheck/00install.out:

* installing *source* package ‘SRAdb’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘SRAdb.Rnw’ 
** testing if installed package can be loaded

* DONE (SRAdb)

SRAdb.Rcheck/SRAdb-Ex.timings:

nameusersystemelapsed
IGVclear000
IGVcollapse000
IGVgenome000
IGVgoto000
IGVload0.0040.0000.000
IGVsession0.0080.0000.007
IGVsnapshot000
IGVsocket000
IGVsort000
SRAdb-package0.0200.0000.018
ascpR0.0000.0000.001
ascpSRA0.0040.0000.001
colDescriptions000
entityGraph0.0000.0000.001
getFASTQfile0.0000.0000.001
getFASTQinfo000
getSRA0.0040.0000.003
getSRAdbFile000
getSRAfile0.0040.0000.001
getSRAinfo0.0000.0000.001
listSRAfile0.0000.0000.001
sraConvert000
sraGraph0.0000.0000.002
startIGV000