BioC 2.10: CHECK report for SLGI on moscato2

Package: SLGI

Version: 1.16.0

Command: rm -rf SLGI.buildbin-libdir && mkdir SLGI.buildbin-libdir && E:\biocbld\bbs-2.10-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=SLGI.buildbin-libdir SLGI_1.16.0.tar.gz >SLGI-install.out 2>&1 && E:\biocbld\bbs-2.10-bioc\R\bin\R.exe CMD check --library=SLGI.buildbin-libdir --install="check:SLGI-install.out" --force-multiarch --no-vignettes --timings SLGI_1.16.0.tar.gz && mv SLGI.buildbin-libdir/* SLGI.Rcheck/ && rmdir SLGI.buildbin-libdir

StartedAt: 2012-09-24 02:28:35 -0700 (Mon, 24 Sep 2012)

EndedAt: 2012-09-24 02:36:41 -0700 (Mon, 24 Sep 2012)

EllapsedTime: 486.0 seconds

RetCode: 0

Status: OK

CheckDir: SLGI.Rcheck

Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.10-bioc/meat/SLGI.Rcheck'
* using R version 2.15.1 (2012-06-22)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'SLGI/DESCRIPTION' ... OK
* this is package 'SLGI' version '1.16.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'SLGI' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 15.9Mb
  sub-directories of 1Mb or more:
    data      4.2Mb
    extdata  11.3Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  'E:/biocbld/bbs-2.10-bioc/meat/SLGI.Rcheck/00check.log'
for details.


install for i386

* installing *source* package 'SLGI' ...
** R
** data
** inst
** preparing package for lazy loading
No methods found in "BiocGenerics" for requests: plot
Creating a generic function for 'plot' from package 'graphics' in package 'SLGI'
** help
*** installing help indices
** building package indices
** installing vignettes
   'SLGI.Rnw' 
** testing if installed package can be loaded
No methods found in "BiocGenerics" for requests: plot

install for x64

* installing *source* package 'SLGI' ...
** testing if installed package can be loaded
Warning in fun(libname, pkgname) :
  Rgraphviz built with Graphviz version 2.20.3.
Found installed Graphviz version 2.25.20090912.445. This _may_ cause problems.
No methods found in "BiocGenerics" for requests: plot
* MD5 sums
packaged installation of 'SLGI' as SLGI_1.16.0.zip

* DONE (SLGI)

Summary

Command output