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Package 91/233HostnameOS / ArchBUILDCHECKBUILD BIN
globaltest 4.8.0
Jelle Goeman
Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/globaltest
Last Changed Rev: 27709 / Revision: 30966
Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: globaltest
Version: 4.8.0
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check globaltest_4.8.0.tar.gz
StartedAt: 2008-04-09 19:35:03 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 19:45:04 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 601.0 seconds
RetCode: 0
Status: OK
CheckDir: globaltest.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/globaltest.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'globaltest/DESCRIPTION' ... OK
* this is package 'globaltest' version '4.8.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'globaltest' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating globaltest-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating globaltest-manual.tex ... OK
* checking globaltest-manual.tex ... OK

globaltest.Rcheck/00install.out:

installing R.css in D:/biocbld/bbs-2.1-bioc/meat/globaltest.Rcheck


---------- Making package globaltest ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing data files
  preparing package globaltest for lazy loading
Loading required package: multtest
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: survival
Loading required package: splines
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: annotate
Loading required package: xtable
Creating a new generic function for "fitted.values" in "globaltest"
Creating a new generic function for "residuals" in "globaltest"
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'globaltest'
     Formats: text html latex example chm 
  GOstructure                       text    html    latex           chm
  annotation.vandeVijver            text    html    latex           chm
  checkerboard                      text    html    latex   example chm
  geneplot                          text    html    latex   example chm
  globaltest                        text    html    latex   example chm
  gostructure.vandeVijver           text    html    latex           chm
  gt.barplot-class                  text    html    latex           chm
  gt.result-class                   text    html    latex           chm
  gtGO                              text    html    latex   example chm
  mlogit                            text    html    latex   example chm
  multtest                          text    html    latex   example chm
  permutations                      text    html    latex   example chm
  regressionplot                    text    html    latex   example chm
  sampleplot                        text    html    latex   example chm
  sampling                          text    html    latex   example chm
  vandeVijver                       text    html    latex           chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.
HHC4016: Warning: Cannot open "es\Windows Resource Kits\Tools\;c:\Program Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.1-bioc\meat\globaltest.Rcheck\00_pkg_src\globaltest\chm\globaltest.chm

HHC4016: Warning: Cannot open "es\Windows Resource Kits\Tools\;c:\Program Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".


The following files were not compiled:
  adding MD5 sums

* DONE (globaltest)