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flowCore 1.4.0
Nolwenn Le Meur
Last Changed Date: 2007-10-02 17:41:09 -0700
Last Changed Rev: 27709
lamb1 Linux (SUSE 10.1) x86_64  OK  OK 
wellington Linux (SUSE 9.2) i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) x64  OK  OK  OK 
pitt Mac OS X (10.4.10) i386 [ OK ] OK  OK 
Package: flowCore
Version: 1.4.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build flowCore
RetCode: 0
Time: 56.7 seconds
Status: OK
PackageFile: flowCore_1.4.0.tar.gz

Command output

* checking for file 'flowCore/DESCRIPTION' ... OK
* preparing 'flowCore':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'flowCore' ...
** libs
** arch - i386
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3    -fPIC  -g -O2 -Wall -march=nocona -c biexponential.c -o biexponential.o
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3    -fPIC  -g -O2 -Wall -march=nocona -c inPolygon.c -o inPolygon.o
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o flowCore.so biexponential.o inPolygon.o   -F/Library/Frameworks/R.framework/.. -framework R 
** arch - ppc
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -c biexponential.c -o biexponential.o
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -c inPolygon.c -o inPolygon.o
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o flowCore.so biexponential.o inPolygon.o   -F/Library/Frameworks/R.framework/.. -framework R 
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: rrcov
Loading required package: robustbase
Scalable Robust Estimators with High Breakdown Point (version 0.4-01)
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Creating a new generic function for "colnames" in "flowCore"
Creating a new generic function for "colnames<-" in "flowCore"
Creating a new generic function for "nrow" in "flowCore"
Creating a new generic function for "ncol" in "flowCore"
** help
 >>> Building/Updating help pages for package 'flowCore'
     Formats: text html latex example 
  GvHD                              text    html    latex
  KmeansFilter                      text    html    latex   example
  Subset-methods                    text    html    latex   example
  arcsinhTransform                  text    html    latex   example
  biexponentialTransform            text    html    latex   example
  coerce                            text    html    latex   example
  compensate                        text    html    latex   example
  concreteFilter-class              text    html    latex
  each_col                          text    html    latex   example
  ellipsoidGate                     text    html    latex   example
  expressionFilter-class            text    html    latex
  filter-and-methods                text    html    latex
  filter-class                      text    html    latex
  filter-in-methods                 text    html    latex   example
  filter-on-methods                 text    html    latex   example
  filter                            text    html    latex   example
  filterDetails-methods             text    html    latex
  filterReference-class             text    html    latex   example
  filterResult-class                text    html    latex   example
  filterSet-class                   text    html    latex   example
  flowFrame-class                   text    html    latex
  flowSet-class                     text    html    latex   example
  flowSet                           text    html    latex
  fsApply                           text    html    latex   example
  identifier                        text    html    latex   example
  keyword-methods                   text    html    latex   example
  linearTransform                   text    html    latex   example
  lnTransform                       text    html    latex   example
  logTransform                      text    html    latex   example
  logicalFilterResult-class         text    html    latex   example
  logicleTransform                  text    html    latex   example
  manyFilterResult-class            text    html    latex   example
  multipleFilterResult-class        text    html    latex   example
  norm2Filter-class                 text    html    latex   example
  parameterFilter-class             text    html    latex
  parameters                        text    html    latex   example
  print.filterSummary               text    html    latex   example
  quadraticTransform                text    html    latex   example
  randomFilterResult-class          text    html    latex
  read.FCS                          text    html    latex   example
  read.FCSheader                    text    html    latex   example
  read.flowSet                      text    html    latex   example
  rectangleGate                     text    html    latex   example
  sampleFilter-class                text    html    latex   example
  sampleFilter                      text    html    latex   example
  scaleTransform                    text    html    latex   example
  setOperationFilter-class          text    html    latex
  spillover-flowSet                 text    html    latex
  splitScaleTransform               text    html    latex   example
  transform-class                   text    html    latex   example
  transformFilter-class             text    html    latex   example
  transformList-class               text    html    latex   example
  transformMap-class                text    html    latex   example
  truncateTransform                 text    html    latex   example
** building package indices ...
* DONE (flowCore)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
WARNING: directory 'flowCore/unitTests/standardsCompliance/Compensation-ML_ComplianceTests' is empty
WARNING: directory 'flowCore/unitTests/standardsCompliance/FCS_ComplianceTests' is empty
WARNING: directory 'flowCore/unitTests/standardsCompliance/Gating-ML_ComplianceTests/ValidGateTests/FCS_Files' is empty
WARNING: directory 'flowCore/unitTests/standardsCompliance/Gating-ML_ComplianceTests/ValidGateTests/RUnitScript_Files' is empty
WARNING: directory 'flowCore/unitTests/standardsCompliance/Transformation-ML_ComplianceTests' is empty
* building 'flowCore_1.4.0.tar.gz'