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GeneticsPed

1.0.0

Gregor Gorjanc
Last Changed Date: 2007-04-24 11:21:48 -0700
Last Changed Rev: 24214
lamb1 Linux (SUSE 10.1) x86_64  OK  OK 
wellington Linux (SUSE 9.2) i686  OK  OK 
lemming Windows Server 2003 (32-bit) x64  OK  OK [ OK ]
Package: GeneticsPed
Version: 1.0.0
Command: D:\biocbld\bbs-2.0-bioc\R\bin\R.exe CMD INSTALL --build --library=GeneticsPed.buildbin-libdir GeneticsPed_1.0.0.tar.gz
RetCode: 0
Time: 25.1 seconds
Status: OK
PackageFile: GeneticsPed_1.0.0.zip

Command output

installing R.css in D:/biocbld/bbs-2.0-bioc/meat/GeneticsPed.buildbin-libdir

Using auto-selected zip options ''

---------- Making package GeneticsPed ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making sargolzaei.d from sargolzaei.c
making ainverse.d from ainverse.cc
making eibd.d from eibd.cc
making inbreed.d from inbreed.cc
making inverseAdditive.d from inverseAdditive.cc
making meuwissen.d from meuwissen.cc
making pedSort.d from pedSort.cc
making pedtemplate.d from pedtemplate.cc
making register.d from register.cc
making sortped.d from sortped.cc
gcc   -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O3 -std=gnu99   -c sargolzaei.c -o sargolzaei.o
sargolzaei.c: In function `sargolzaei':
sargolzaei.c:62: warning: statement with no effect
sargolzaei.c:19: warning: 'S' might be used uninitialized in this function
sargolzaei.c:19: warning: 'MIP' might be used uninitialized in this function
sargolzaei.c:19: warning: 'N' might be used uninitialized in this function
g77 -O3 -Wall   -c ggmatmult.f -o ggmatmult.o
g77 -O3 -Wall   -c gpi.f -o gpi.o
g++   -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c ainverse.cc -o ainverse.o
g++   -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c eibd.cc -o eibd.o
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_tree.h: In member function `typename std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_Link_type std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_copy(const std::_Rb_tree_node<_Val>*, std::_Rb_tree_node<_Val>*) [with _Key = unsigned int, _Val = std::pair<const unsigned int, EIBDMember>, _KeyOfValue = std::_Select1st<std::pair<const unsigned int, EIBDMember> >, _Compare = std::less<unsigned int>, _Alloc = std::allocator<std::pair<const unsigned int, EIBDMember> >]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_tree.h:1029: warning: '__top' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_tree.h:365: warning: '__tmp' might be used uninitialized in this function
g++   -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c inbreed.cc -o inbreed.o
g++   -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c inverseAdditive.cc -o inverseAdditive.o
g++   -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c meuwissen.cc -o meuwissen.o
g++   -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c pedSort.cc -o pedSort.o
g++   -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c pedtemplate.cc -o pedtemplate.o
g++   -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c register.cc -o register.o
g++   -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c sortped.cc -o sortped.o
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = std::string, _Alloc = std::allocator<std::string>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
windres -I D:/biocbld/bbs-2.0-bioc/R/include  -i GeneticsPed_res.rc -o GeneticsPed_res.o
g++  -shared -s  -o GeneticsPed.dll GeneticsPed.def sargolzaei.o ggmatmult.o gpi.o ainverse.o eibd.o inbreed.o inverseAdditive.o meuwissen.o pedSort.o pedtemplate.o register.o sortped.o GeneticsPed_res.o  -LD:/biocbld/bbs-2.0-bioc/R/bin   -lg2c -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'GeneticsPed'
     Formats: text html latex example chm 
  Mrode                             text    html    latex   example chm
  TDT                               text    html    latex   example chm
  check                             text    html    latex   example chm
  codeUnit                          text    html    latex   example chm
  extend                            text    html    latex   example chm
  family                            text    html    latex   example chm
  founder                           text    html    latex   example chm
  geneContribution                  text    html    latex   example chm
  generatePedigree                  text    html    latex   example chm
  generation                        text    html    latex   example chm
  gpi                               text    html    latex   example chm
  inbreeding                        text    html    latex   example chm
  model.matrix                      text    html    latex   example chm
  nIndividual                       text    html    latex   example chm
  pedigree                          text    html    latex   example chm
  relationshipAdditive              text    html    latex   example chm
  removeIndividual                  text    html    latex   example chm
  sort.pedigree                     text    html    latex   example chm
  summary.pedigree                  text    html    latex   example chm
  undocumented                      text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\bbs-2.0-bioc\meat\R.INSTALL.556\GeneticsPed\chm\GeneticsPed.chm





Compile time: 0 minutes, 0 seconds

21	Topics

91	Local links

12	Internet links

1	Graphic





Created d:\biocbld\bbs-2.0-bioc\meat\R.INSTALL.556\GeneticsPed\chm\GeneticsPed.chm, 51,306 bytes

Compression decreased file by 40,438 bytes.

  preparing package GeneticsPed for lazy loading
Loading required package: gdata
Loading required package: MASS
  adding MD5 sums

packaged installation of package 'GeneticsPed' as GeneticsPed_1.0.0.zip
* DONE (GeneticsPed)