SCATEData

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.18 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see SCATEData.

Data for SCATE (Single-cell ATAC-seq Signal Extraction and Enhancement)


Bioconductor version: 3.18

SCATEData is an ExperimentHub package for SCATE which is a software tool for extracting and enhancing the sparse and discrete Single-cell ATAC-seq Signal.

Author: Zhicheng Ji [aut], Weiqiang Zhou [aut], Wenpin Hou [cre, aut] , Hongkai Ji [aut]

Maintainer: Wenpin Hou <wp.hou3 at gmail.com>

Citation (from within R, enter citation("SCATEData")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SCATEData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SCATEData")
1. SCATEData package HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews ExperimentData, ExperimentHub
Version 1.12.0
License MIT + file LICENSE
Depends R (>= 3.5.0), ExperimentHub, GenomicAlignments, GenomicRanges, base
Imports utils
System Requirements
URL
Bug Reports https://github.com/Winnie09/SCATEData/issues
See More
Suggests knitr, rmarkdown
Linking To
Enhances
Depends On Me SCATE
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SCATEData_1.12.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/SCATEData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SCATEData
Package Short Url https://bioconductor.org/packages/SCATEData/
Package Downloads Report Download Stats