shiny.gosling
A Grammar-based Toolkit for Scalable and Interactive Genomics Data Visualization for R and Shiny
Bioconductor version: Release (3.20)
A Grammar-based Toolkit for Scalable and Interactive Genomics Data Visualization. http://gosling-lang.org/. This R package is based on gosling.js. It uses R functions to create gosling plots that could be embedded onto R Shiny apps.
Author: Appsilon [aut, cre], Anirban Shaw [aut] 
, Federico Rivadeneira [aut] , Vedha Viyash [aut]
Maintainer: Appsilon <opensource at appsilon.com>
citation("shiny.gosling")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("shiny.gosling")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("shiny.gosling")| 1. Introduction to shiny.gosling | HTML | R Script |
| 2. Using a GRanges object in shiny.gosling | HTML | R Script |
| 3. Creating a Circos Plot with VCF Data | HTML | R Script |
| 4. Creating an Interactive Line Chart with shiny.gosling | HTML | R Script |
| 5. Creating a Multi-Scale Sequence Track | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Genetics, ShinyApps, Software, Visualization |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.19 (R-4.4) (0.5 years) |
| License | LGPL-3 |
| Depends | |
| Imports | htmltools, jsonlite, rlang, shiny, shiny.react, fs, digest, rjson |
| System Requirements | |
| URL |
See More
| Suggests | config, covr, knitr, lintr, mockery (>= 0.4.3), rcmdcheck, rmarkdown, sessioninfo, spelling, testthat (>= 3.0.0), GenomicRanges, VariantAnnotation, StructuralVariantAnnotation, biovizBase, ggbio |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | gINTomics |
| Suggests Me | AlphaMissenseR |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | shiny.gosling_1.2.0.tar.gz |
| Windows Binary (x86_64) | shiny.gosling_1.2.0.zip (64-bit only) |
| macOS Binary (x86_64) | shiny.gosling_1.2.0.tgz |
| macOS Binary (arm64) | shiny.gosling_1.1.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/shiny.gosling |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/shiny.gosling |
| Bioc Package Browser | https://code.bioconductor.org/browse/shiny.gosling/ |
| Package Short Url | https://bioconductor.org/packages/shiny.gosling/ |
| Package Downloads Report | Download Stats |