matter

This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see matter.

Out-of-memory dense and sparse signal arrays


Bioconductor version: 3.18

Memory-efficient file-based data structures for dense and sparse vectors, matrices, arrays, and lists with applications to nonuniformly sampled signals and spectra.

Author: Kylie A. Bemis <k.bemis at northeastern.edu>

Maintainer: Kylie A. Bemis <k.bemis at northeastern.edu>

Citation (from within R, enter citation("matter")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("matter")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("matter")
1. Matter 2: User guide for flexible out-of-memory data structures HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, DataRepresentation, DimensionReduction, Infrastructure, Preprocessing, Software
Version 2.4.1
In Bioconductor since BioC 3.4 (R-3.3) (7.5 years)
License Artistic-2.0
Depends R (>= 4.0), BiocParallel, Matrix, methods
Imports BiocGenerics, ProtGenerics, digest, irlba, biglm, stats, stats4, graphics, grDevices, utils
System Requirements
URL https://github.com/kuwisdelu/matter
Bug Reports https://github.com/kuwisdelu/matter/issues
See More
Suggests BiocStyle, knitr, testthat
Linking To
Enhances
Depends On Me CardinalIO
Imports Me Cardinal
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package matter_2.4.1.tar.gz
Windows Binary matter_2.4.1.zip (64-bit only)
macOS Binary (x86_64) matter_2.4.1.tgz
macOS Binary (arm64) matter_2.4.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/matter
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/matter
Bioc Package Browser https://code.bioconductor.org/browse/matter/
Package Short Url https://bioconductor.org/packages/matter/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.18 Source Archive