fCI

f-divergence Cutoff Index for Differential Expression Analysis in Transcriptomics and Proteomics

Bioconductor version: Release (3.20)

(f-divergence Cutoff Index), is to find DEGs in the transcriptomic & proteomic data, and identify DEGs by computing the difference between the distribution of fold-changes for the control-control and remaining (non-differential) case-control gene expression ratio data. fCI provides several advantages compared to existing methods.

Author: Shaojun Tang

Maintainer: Shaojun Tang <tangshao2008 at gmail.com>

Citation (from within R, enter citation("fCI")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("fCI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("fCI")

fCI	HTML	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Proteomics, Software
Version	1.36.0
In Bioconductor since	BioC 3.2 (R-3.2) (9 years)
License	GPL (>= 2)
Depends	R (>= 3.1), FNN, psych, gtools, zoo, rgl, grid, VennDiagram
Imports
System Requirements
URL

Suggests	knitr, rmarkdown, BiocStyle
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Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	fCI_1.36.0.tar.gz
Windows Binary (x86_64)	fCI_1.36.0.zip
macOS Binary (x86_64)	fCI_1.36.0.tgz
macOS Binary (arm64)	fCI_1.35.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/fCI
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/fCI
Bioc Package Browser	https://code.bioconductor.org/browse/fCI/
Package Short Url	https://bioconductor.org/packages/fCI/
Package Downloads Report	Download Stats