evaluomeR

This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see evaluomeR.

Evaluation of Bioinformatics Metrics


Bioconductor version: 3.18

Evaluating the reliability of your own metrics and the measurements done on your own datasets by analysing the stability and goodness of the classifications of such metrics.

Author: José Antonio Bernabé-Díaz [aut, cre], Manuel Franco [aut], Juana-María Vivo [aut], Manuel Quesada-Martínez [aut], Astrid Duque-Ramos [aut], Jesualdo Tomás Fernández-Breis [aut]

Maintainer: José Antonio Bernabé-Díaz <joseantonio.bernabe1 at um.es>

Citation (from within R, enter citation("evaluomeR")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("evaluomeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("evaluomeR")
Evaluation of Bioinformatics Metrics with evaluomeR HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews Classification, Clustering, FeatureExtraction, Software
Version 1.18.0
In Bioconductor since BioC 3.9 (R-3.6) (5 years)
License GPL-3
Depends R (>= 3.6), SummarizedExperiment, MultiAssayExperiment, cluster (>= 2.0.9), fpc (>= 2.2-3), randomForest (>= 4.6.14), flexmix (>= 2.3.15)
Imports corrplot (>= 0.84), grDevices, graphics, reshape2, ggplot2, ggdendro, plotrix, stats, matrixStats, Rdpack, MASS, class, prabclus, mclust, kableExtra
System Requirements
URL https://github.com/neobernad/evaluomeR
Bug Reports https://github.com/neobernad/evaluomeR/issues
See More
Suggests BiocStyle, knitr, rmarkdown, magrittr
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package evaluomeR_1.18.0.tar.gz
Windows Binary evaluomeR_1.18.0.zip
macOS Binary (x86_64) evaluomeR_1.18.0.tgz
macOS Binary (arm64) evaluomeR_1.18.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/evaluomeR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/evaluomeR
Bioc Package Browser https://code.bioconductor.org/browse/evaluomeR/
Package Short Url https://bioconductor.org/packages/evaluomeR/
Package Downloads Report Download Stats