Guitar

This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see Guitar.

Guitar


Bioconductor version: 3.18

The package is designed for visualization of RNA-related genomic features with respect to the landmarks of RNA transcripts, i.e., transcription starting site, start codon, stop codon and transcription ending site.

Author: Xiao Du, Hui Liu, Lin Zhang, Jia Meng

Maintainer: Jia Meng <jia.meng at xjtlu.edu.cn>

Citation (from within R, enter citation("Guitar")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Guitar")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Guitar")
Guitar PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Alignment, DataImport, MethylSeq, QualityControl, RNASeq, Sequencing, Software, SplicedAlignment, Transcription
Version 2.18.0
In Bioconductor since BioC 3.2 (R-3.2) (8.5 years)
License GPL-2
Depends GenomicFeatures, rtracklayer, AnnotationDbi, GenomicRanges, magrittr, ggplot2, methods, stats, utils, knitr, dplyr
Imports
System Requirements
URL
See More
Suggests
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Guitar_2.18.0.tar.gz
Windows Binary Guitar_2.18.0.zip
macOS Binary (x86_64) Guitar_2.18.0.tgz
macOS Binary (arm64) Guitar_2.18.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Guitar
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Guitar
Bioc Package Browser https://code.bioconductor.org/browse/Guitar/
Package Short Url https://bioconductor.org/packages/Guitar/
Package Downloads Report Download Stats