GeneticsPed

Pedigree and genetic relationship functions

Bioconductor version: Release (3.20)

Classes and methods for handling pedigree data. It also includes functions to calculate genetic relationship measures as relationship and inbreeding coefficients and other utilities. Note that package is not yet stable. Use it with care!

Author: Gregor Gorjanc and David A. Henderson <DNADavenator at GMail.Com>, with code contributions by Brian Kinghorn and Andrew Percy (see file COPYING)

Maintainer: David Henderson <DNADavenator at GMail.Com>

Citation (from within R, enter citation("GeneticsPed")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GeneticsPed")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GeneticsPed")

Calculation of genetic relatedness/relationship between individuals in the pedigree	PDF	R Script
Pedigree handling	PDF	R Script
Quantitative genetic (animal) model example in R	PDF	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Genetics, Software
Version	1.68.0
In Bioconductor since	BioC 2.0 (R-2.5) (17.5 years)
License	LGPL (>= 2.1) \| file LICENSE
Depends	R (>= 2.4.0), MASS
Imports	gdata, genetics
System Requirements
URL	http://rgenetics.org

Suggests	RUnit, gtools
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GeneticsPed_1.68.0.tar.gz
Windows Binary (x86_64)	GeneticsPed_1.68.0.zip (64-bit only)
macOS Binary (x86_64)	GeneticsPed_1.68.0.tgz
macOS Binary (arm64)	GeneticsPed_1.67.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GeneticsPed
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GeneticsPed
Bioc Package Browser	https://code.bioconductor.org/browse/GeneticsPed/
Package Short Url	https://bioconductor.org/packages/GeneticsPed/
Package Downloads Report	Download Stats