AnVILBase

Generic functions for interacting with the AnVIL ecosystem


Bioconductor version: Release (3.20)

Provides generic functions for interacting with the AnVIL ecosystem. Packages that use either GCP or Azure in AnVIL are built on top of AnVILBase. Extension packages will provide methods for interacting with other cloud providers.

Author: Marcel Ramos [aut, cre] , Martin Morgan [aut, ctb] , NIH NHGRI U24HG004059 [fnd]

Maintainer: Marcel Ramos <marcel.ramos at sph.cuny.edu>

Citation (from within R, enter citation("AnVILBase")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("AnVILBase")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AnVILBase")
Introduction to AnVILBase HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Infrastructure, Software
Version 1.0.0
In Bioconductor since BioC 3.20 (R-4.4) (< 6 months)
License Artistic-2.0
Depends
Imports httr, httr2, dplyr, jsonlite, methods, tibble
System Requirements
URL https://github.com/Bioconductor/AnVILBase
Bug Reports https://github.com/Bioconductor/AnVILBase/issues
See More
Suggests AnVIL, AnVILAz, AnVILGCP, BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0), tinytest
Linking To
Enhances
Depends On Me AnVIL, AnVILWorkflow
Imports Me AnVILAz, AnVILGCP
Suggests Me terraTCGAdata
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package AnVILBase_1.0.0.tar.gz
Windows Binary (x86_64) AnVILBase_1.0.0.zip
macOS Binary (x86_64) AnVILBase_1.0.0.tgz
macOS Binary (arm64) AnVILBase_0.99.31.tgz
Source Repository git clone https://git.bioconductor.org/packages/AnVILBase
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/AnVILBase
Bioc Package Browser https://code.bioconductor.org/browse/AnVILBase/
Package Short Url https://bioconductor.org/packages/AnVILBase/
Package Downloads Report Download Stats