msd16s

This is the development version of msd16s; for the stable release version, see msd16s.

Healthy and moderate to severe diarrhea 16S expression data

Bioconductor version: Development (3.21)

Gut 16S sequencing expression data from 992 healthy and moderate-to-severe diarrhetic samples used in 'Diarrhea in young children from low-income countries leads to large-scale alterations in intestinal microbiota composition'.

Author: Joseph N. Paulson, Hector Corrada Bravo, Mihai Pop

Maintainer: Joseph N. Paulson <jpaulson at umiacs.umd.edu>

Citation (from within R, enter citation("msd16s")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("msd16s")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("msd16s")

msd16s	PDF	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, MicrobiomeData, SequencingData
Version	1.27.0
License	Artistic-2.0
Depends	R (>= 2.10), Biobase, metagenomeSeq
Imports
System Requirements
URL	http://www.cbcb.umd.edu/research/projects/GEMS-pathogen-discovery

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Suggests Me	scTreeViz
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Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	msd16s_1.27.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/msd16s
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/msd16s
Package Short Url	https://bioconductor.org/packages/msd16s/
Package Downloads Report	Download Stats