rigvf
This is the development version of rigvf; to use it, please install the devel version of Bioconductor.
R interface to the IGVF Catalog
Bioconductor version: Development (3.21)
The IGVF Catalog provides data on the impact of genomic variants on function. The `rigvf` package provides an interface to the IGVF Catalog, allowing easy integration with Bioconductor resources.
Author: Martin Morgan [aut] (ORCID:
Maintainer: Michael Love <michaelisaiahlove at gmail.com>
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("rigvf")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("rigvf")| Accessing data from the IGVF Catalog | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Annotation, FunctionalGenomics, GeneRegulation, GeneTarget, GenomicVariation, Software, ThirdPartyClient, VariantAnnotation |
| Version | 0.99.6 |
| In Bioconductor since | BioC 3.21 (R-4.5) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.1.0) |
| Imports | methods, httr2, rjsoncons, dplyr, tidyr, rlang, memoise, cachem, whisker, jsonlite, GenomicRanges, IRanges, GenomeInfoDb |
| System Requirements | |
| URL | https://IGVF.github.io/rigvf |
| Bug Reports | https://github.com/IGVF/rigvf/issues |
See More
| Suggests | knitr, rmarkdown, testthat (>= 3.0.0), plyranges, plotgardener, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg38.knownGene |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | rigvf_0.99.6.tar.gz |
| Windows Binary (x86_64) | rigvf_0.99.6.zip |
| macOS Binary (x86_64) | rigvf_0.99.6.tgz |
| macOS Binary (arm64) | rigvf_0.99.6.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/rigvf |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/rigvf |
| Bioc Package Browser | https://code.bioconductor.org/browse/rigvf/ |
| Package Short Url | https://bioconductor.org/packages/rigvf/ |
| Package Downloads Report | Download Stats |