rBLAST
This is the development version of rBLAST; for the stable release version, see rBLAST.
R Interface for the Basic Local Alignment Search Tool
Bioconductor version: Development (3.21)
Seamlessly interfaces the Basic Local Alignment Search Tool (BLAST) to search genetic sequence data bases. This work was partially supported by grant no. R21HG005912 from the National Human Genome Research Institute.
Author: Michael Hahsler [aut, cre] (ORCID:
Maintainer: Michael Hahsler <mhahsler at lyle.smu.edu>
citation("rBLAST")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("rBLAST")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("rBLAST")| rBLAST: R Interface for the Basic Local Alignment Search Tool | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| INSTALL | Text |
Details
| biocViews | Alignment, DataImport, Genetics, SequenceMatching, Sequencing, Software |
| Version | 1.3.0 |
| In Bioconductor since | BioC 3.19 (R-4.4) (0.5 years) |
| License | GPL-3 |
| Depends | Biostrings(>= 2.26.2) |
| Imports | methods, utils, BiocFileCache |
| System Requirements | ncbi-blast+ |
| URL | https://github.com/mhahsler/rBLAST |
| Bug Reports | https://github.com/mhahsler/rBLAST/issues |
See More
| Suggests | knitr, rmarkdown, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | rBLAST_1.3.0.tar.gz |
| Windows Binary (x86_64) | rBLAST_1.3.0.zip |
| macOS Binary (x86_64) | rBLAST_1.3.0.tgz |
| macOS Binary (arm64) | rBLAST_1.3.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/rBLAST |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/rBLAST |
| Bioc Package Browser | https://code.bioconductor.org/browse/rBLAST/ |
| Package Short Url | https://bioconductor.org/packages/rBLAST/ |
| Package Downloads Report | Download Stats |