TransView
This is the development version of TransView; for the stable release version, see TransView.
Read density map construction and accession. Visualization of ChIPSeq and RNASeq data sets
Bioconductor version: Development (3.21)
This package provides efficient tools to generate, access and display read densities of sequencing based data sets such as from RNA-Seq and ChIP-Seq.
Author: Julius Muller
Maintainer: Julius Muller <ju-mu at alumni.ethz.ch>
Citation (from within R, enter
citation("TransView")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("TransView")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | ChIPSeq, Clustering, DNAMethylation, DataImport, GeneExpression, ImmunoOncology, MethylSeq, Microarray, MultipleComparison, RNASeq, Sequencing, Software, Transcription, Visualization |
| Version | 1.51.0 |
| In Bioconductor since | BioC 2.11 (R-2.15) (12 years) |
| License | GPL-3 |
| Depends | methods, GenomicRanges |
| Imports | BiocGenerics, S4Vectors(>= 0.9.25), IRanges, zlibbioc, gplots |
| System Requirements | GNU make |
| URL | http://bioconductor.org/packages/release/bioc/html/TransView.html |
See More
| Suggests | RUnit, pasillaBamSubset, BiocManager |
| Linking To | Rhtslib(>= 1.99.1) |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/TransView |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TransView |
| Package Short Url | https://bioconductor.org/packages/TransView/ |
| Package Downloads Report | Download Stats |