SNAGEE
This is the development version of SNAGEE; for the stable release version, see SNAGEE.
Signal-to-Noise applied to Gene Expression Experiments
Bioconductor version: Development (3.21)
Signal-to-Noise applied to Gene Expression Experiments. Signal-to-noise ratios can be used as a proxy for quality of gene expression studies and samples. The SNRs can be calculated on any gene expression data set as long as gene IDs are available, no access to the raw data files is necessary. This allows to flag problematic studies and samples in any public data set.
Author: David Venet <davenet at ulb.ac.be>
Maintainer: David Venet <davenet at ulb.ac.be>
citation("SNAGEE")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("SNAGEE")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SNAGEE")| SNAGEE Vignette | R Script | |
| Reference Manual |
Details
| biocViews | Microarray, OneChannel, QualityControl, Software, TwoChannel |
| Version | 1.47.0 |
| In Bioconductor since | BioC 2.12 (R-3.0) (11.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.6.0), SNAGEEdata |
| Imports | |
| System Requirements | |
| URL | http://bioconductor.org/ |
See More
| Suggests | ALL, hgu95av2.db |
| Linking To | |
| Enhances | parallel |
| Depends On Me | |
| Imports Me | |
| Suggests Me | SNAGEEdata |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | SNAGEE_1.47.0.tar.gz |
| Windows Binary (x86_64) | SNAGEE_1.47.0.zip (64-bit only) |
| macOS Binary (x86_64) | SNAGEE_1.47.0.tgz |
| macOS Binary (arm64) | SNAGEE_1.47.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/SNAGEE |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SNAGEE |
| Bioc Package Browser | https://code.bioconductor.org/browse/SNAGEE/ |
| Package Short Url | https://bioconductor.org/packages/SNAGEE/ |
| Package Downloads Report | Download Stats |