QuartPAC

This is the development version of QuartPAC; for the stable release version, see QuartPAC.

Identification of mutational clusters in protein quaternary structures


Bioconductor version: Development (3.21)

Identifies clustering of somatic mutations in proteins over the entire quaternary structure.

Author: Gregory Ryslik, Yuwei Cheng, Hongyu Zhao

Maintainer: Gregory Ryslik <gregory.ryslik at yale.edu>

Citation (from within R, enter citation("QuartPAC")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("QuartPAC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews Clustering, Proteomics, Software, SomaticMutation
Version 1.39.0
In Bioconductor since BioC 3.1 (R-3.2) (9.5 years)
License GPL-2
Depends iPAC, GraphPAC, SpacePAC, data.table
Imports Biostrings, pwalign
System Requirements
URL
See More
Suggests RUnit, BiocGenerics, rgl
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/QuartPAC
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/QuartPAC
Package Short Url https://bioconductor.org/packages/QuartPAC/
Package Downloads Report Download Stats