ComPrAn
This is the development version of ComPrAn; for the stable release version, see ComPrAn.
Complexome Profiling Analysis package
Bioconductor version: Development (3.21)
This package is for analysis of SILAC labeled complexome profiling data. It uses peptide table in tab-delimited format as an input and produces ready-to-use tables and plots.
Author: Rick Scavetta [aut], Petra Palenikova [aut, cre] (ORCID:
Maintainer: Petra Palenikova <palenikova3 at gmail.com>
citation("ComPrAn")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("ComPrAn")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ComPrAn")| fileFormats.html | HTML | R Script |
| Protein workflow | HTML | R Script |
| SILAC complexomics | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | MassSpectrometry, Proteomics, Software, Visualization |
| Version | 1.15.0 |
| In Bioconductor since | BioC 3.13 (R-4.1) (3.5 years) |
| License | MIT + file LICENSE |
| Depends | |
| Imports | data.table, dplyr, forcats, ggplot2, magrittr, purrr, tidyr, rlang, stringr, shiny, DT, RColorBrewer, VennDiagram, rio, scales, shinydashboard, shinyjs, stats, tibble, grid |
| System Requirements | |
| URL |
See More
| Suggests | testthat (>= 2.1.0), knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ComPrAn_1.15.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/ComPrAn |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ComPrAn |
| Bioc Package Browser | https://code.bioconductor.org/browse/ComPrAn/ |
| Package Short Url | https://bioconductor.org/packages/ComPrAn/ |
| Package Downloads Report | Download Stats |