nanotubes

DOI: 10.18129/B9.bioc.nanotubes    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see nanotubes.

Mouse nanotube CAGE data

Bioconductor version: 3.9

Cap Analysis of Gene Expression (CAGE) data from "Identification of Gene Transcription Start Sites and Enhancers Responding to Pulmonary Carbon Nanotube Exposure in Vivo" by Bornholdt et al. supplied as CAGE Transcription Start Sites (CTSSs).

Author: Malte Thodberg

Maintainer: Malte Thodberg <maltethodberg at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("nanotubes")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("nanotubes")

 

HTML	R Script	nanotubes
PDF		Reference Manual

Details

biocViews	ExperimentData, ExpressionData, SequencingData
Version	1.0.0
License	GPL-3
Depends	R (>= 3.6)
Imports
LinkingTo
Suggests	knitr, rmarkdown, BiocStyle, GenomicRanges, rtracklayer, CAGEfightR
SystemRequirements
Enhances
URL	https://github.com/MalteThodberg/nanotubes
BugReports	https://github.com/MalteThodberg/nanotubes/issues
Depends On Me	CAGEWorkflow
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	nanotubes_1.0.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/nanotubes
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/nanotubes
Package Short Url	https://bioconductor.org/packages/nanotubes/
Package Downloads Report	Download Stats