ccdata

DOI: 10.18129/B9.bioc.ccdata    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see ccdata.

Data for Combination Connectivity Mapping (ccmap) Package

Bioconductor version: 3.9

This package contains microarray gene expression data generated from the Connectivity Map build 02 and LINCS l1000. The data are used by the ccmap package to find drugs and drug combinations to mimic or reverse a gene expression signature.

Author: Alex Pickering

Maintainer: Alex Pickering <alexvpickering at gmail.com>

Citation (from within R, enter citation("ccdata")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ccdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual
Text   LICENSE

Details

biocViews ExperimentData, ExpressionData, MicroarrayData
Version 1.10.0
License MIT + file LICENSE
Depends R (>= 3.3)
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me ccmap
Suggests Me crossmeta
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ccdata_1.10.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/ccdata
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ccdata
Package Short Url https://bioconductor.org/packages/ccdata/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: