LungCancerLines

DOI: 10.18129/B9.bioc.LungCancerLines    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see LungCancerLines.

Reads from Two Lung Cancer Cell Lines

Bioconductor version: 3.9

Reads from an RNA-seq experiment between two lung cancer cell lines: H1993 (met) and H2073 (primary). The reads are stored as Fastq files and are meant for use with the TP53Genome object in the gmapR package.

Author: Cory Barr, Michael Lawrence

Maintainer: Cory Barr <barr.cory at gene.com>

Citation (from within R, enter citation("LungCancerLines")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("LungCancerLines")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews CancerData, ExperimentData, Genome, LungCancerData, RNASeqData
Version 0.22.0
License Artistic-2.0
Depends
Imports Rsamtools
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me gmapR, HTSeqGenie, VariantTools
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package LungCancerLines_0.22.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/LungCancerLines
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/LungCancerLines
Package Short Url https://bioconductor.org/packages/LungCancerLines/
Package Downloads Report Download Stats

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