survtype

DOI: 10.18129/B9.bioc.survtype    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see survtype.

Subtype Identification with Survival Data

Bioconductor version: 3.9

Subtypes are defined as groups of samples that have distinct molecular and clinical features. Genomic data can be analyzed for discovering patient subtypes, associated with clinical data, especially for survival information. This package is aimed to identify subtypes that are both clinically relevant and biologically meaningful.

Author: Dongmin Jung

Maintainer: Dongmin Jung <dmdmjung at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("survtype")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("survtype")

 

HTML	R Script	survtype
PDF		Reference Manual
Text		NEWS

Details

biocViews	Clustering, Coverage, GeneExpression, Sequencing, Software, StatisticalMethod, Survival
Version	1.0.0
In Bioconductor since	BioC 3.9 (R-3.6) (< 6 months)
License	Artistic-2.0
Depends	SummarizedExperiment, pheatmap, survival, survminer, clustvarsel, stats, utils
Imports
LinkingTo
Suggests	maftools, scales, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	survtype_1.0.0.tar.gz
Windows Binary	survtype_1.0.0.zip
Mac OS X 10.11 (El Capitan)	survtype_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/survtype
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/survtype
Package Short Url	https://bioconductor.org/packages/survtype/
Package Downloads Report	Download Stats