This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see rWikiPathways.
Bioconductor version: 3.9
Use this package to interface with the WikiPathways API.
Author: Egon Willighagen [aut, cre] , Alex Pico [aut]
Maintainer: Egon Willighagen <egon.willighagen at gmail.com>
Citation (from within R,
enter citation("rWikiPathways")
):
To install this package, start R (version "3.6") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("rWikiPathways")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("rWikiPathways")
HTML | R Script | 1. Overview |
HTML | R Script | 2. rWikiPathways and BridgeDbR |
HTML | R Script | 3. rWikiPathways and RCy3 |
HTML | R Script | 4. Pathway Analysis |
Reference Manual | ||
Text | NEWS | |
Text | LICENSE |
biocViews | GraphAndNetwork, Metabolomics, Network, Software, ThirdPartyClient, Visualization |
Version | 1.4.1 |
In Bioconductor since | BioC 3.7 (R-3.5) (1.5 years) |
License | MIT + file LICENSE |
Depends | |
Imports | caTools, httr, RJSONIO, utils, XML |
LinkingTo | |
Suggests | testthat, BiocStyle, knitr, rmarkdown |
SystemRequirements | |
Enhances | |
URL | https://github.com/wikipathways/rwikipathways |
BugReports | https://github.com/wikipathways/rwikipathways/issues |
Depends On Me | |
Imports Me | |
Suggests Me | TRONCO |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | rWikiPathways_1.4.1.tar.gz |
Windows Binary | rWikiPathways_1.4.1.zip |
Mac OS X 10.11 (El Capitan) | rWikiPathways_1.4.1.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/rWikiPathways |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/rWikiPathways |
Package Short Url | https://bioconductor.org/packages/rWikiPathways/ |
Package Downloads Report | Download Stats |
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