plier

DOI: 10.18129/B9.bioc.plier    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see plier.

Implements the Affymetrix PLIER algorithm

Bioconductor version: 3.9

The PLIER (Probe Logarithmic Error Intensity Estimate) method produces an improved signal by accounting for experimentally observed patterns in probe behavior and handling error at the appropriately at low and high signal values.

Author: Affymetrix Inc., Crispin J Miller, PICR

Maintainer: Crispin Miller <cmiller at picr.man.ac.uk>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("plier")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual
Text		README

Details

biocViews	Software
Version	1.54.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 14.5 years)
License	GPL (>= 2)
Depends	R (>= 2.0), methods
Imports	affy, Biobase, methods
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	piano
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	plier_1.54.0.tar.gz
Windows Binary	plier_1.54.0.zip
Mac OS X 10.11 (El Capitan)	plier_1.54.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/plier
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/plier
Package Short Url	https://bioconductor.org/packages/plier/
Package Downloads Report	Download Stats