manta

DOI: 10.18129/B9.bioc.manta    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see manta.

Microbial Assemblage Normalized Transcript Analysis

Bioconductor version: 3.9

Tools for robust comparative metatranscriptomics.

Author: Ginger Armbrust, Adrian Marchetti

Maintainer: Chris Berthiaume <chrisbee at uw.edu>, Adrian Marchetti <amarchetti at unc.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("manta")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("manta")

 

PDF	R Script	manta
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	DataImport, DifferentialExpression, GeneExpression, Genetics, ImmunoOncology, QualityControl, RNASeq, Sequencing, Software, Visualization
Version	1.30.0
In Bioconductor since	BioC 2.10 (R-2.15) (7.5 years)
License	Artistic-2.0
Depends	R (>= 1.8.0), methods, edgeR(>= 2.5.13)
Imports	Hmisc, caroline (>= 0.6.6)
LinkingTo
Suggests	RSQLite, plotrix
SystemRequirements
Enhances
URL	http://manta.ocean.washington.edu/
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	manta_1.30.0.tar.gz
Windows Binary	manta_1.30.0.zip
Mac OS X 10.11 (El Capitan)	manta_1.30.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/manta
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/manta
Package Short Url	https://bioconductor.org/packages/manta/
Package Downloads Report	Download Stats