levi

DOI: 10.18129/B9.bioc.levi    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see levi.

Landscape Expression Visualization Interface

Bioconductor version: 3.9

The tool integrates data from biological networks with transcriptomes, displaying a heatmap with surface curves to evidence the altered regions.

Author: Jose Rafael Pilan <rafael.pilan at unesp.br>, Agnes Alessandra Sekijima Takeda <agnes.takeda at unesp.br>, Jose Luiz Rybarczyk Filho <jose.luiz at unesp.br>

Maintainer: Jose Luiz Rybarczyk Filho <jose.luiz at unesp.br>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("levi")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("levi")

 

HTML	R Script	Using levi
PDF		Reference Manual
Text		NEWS

Details

biocViews	GeneExpression, Network, Sequencing, Software
Version	1.2.0
In Bioconductor since	BioC 3.8 (R-3.5) (1 year)
License	GPL (>= 2)
Depends	R (>= 3.5.0)
Imports	DT (>= 0.4), RColorBrewer (>= 1.1-2), colorspace (>= 1.3-2), dplyr (>= 0.7.4), ggplot2 (>= 2.2.1), httr (>= 1.3.1), igraph (>= 1.2.1), reshape2 (>= 1.4.3), shiny (>= 1.0.5), shinydashboard (>= 0.7.0), shinyjs (>= 1.0), xml2 (>= 1.2.0), knitr, Rcpp (>= 0.12.18), grid, grDevices, stats, utils, testthat
LinkingTo	Rcpp
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	levi_1.2.0.tar.gz
Windows Binary	levi_1.2.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	levi_1.2.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/levi
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/levi
Package Short Url	https://bioconductor.org/packages/levi/
Package Downloads Report	Download Stats