This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see iteremoval.
Bioconductor version: 3.9
The package provides a flexible algorithm to screen features of two distinct groups in consideration of overfitting and overall performance. It was originally tailored for methylation locus screening of NGS data, and it can also be used as a generic method for feature selection. Each step of the algorithm provides a default method for simple implemention, and the method can be replaced by a user defined function.
Author: Jiacheng Chuan [aut, cre]
Maintainer: Jiacheng Chuan <jiacheng_chuan at outlook.com>
Citation (from within R,
enter citation("iteremoval")
):
To install this package, start R (version "3.6") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("iteremoval")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("iteremoval")
HTML | R Script | An introduction to iteremoval |
Reference Manual | ||
Text | NEWS |
biocViews | Software, StatisticalMethod |
Version | 1.4.0 |
In Bioconductor since | BioC 3.7 (R-3.5) (1.5 years) |
License | GPL-2 |
Depends | R (>= 3.5.0), ggplot2 (>= 2.2.1) |
Imports | magrittr, graphics, utils, GenomicRanges, SummarizedExperiment |
LinkingTo | |
Suggests | testthat, knitr |
SystemRequirements | |
Enhances | |
URL | https://github.com/cihga39871/iteremoval |
BugReports | https://github.com/cihga39871/iteremoval/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | iteremoval_1.4.0.tar.gz |
Windows Binary | iteremoval_1.4.0.zip |
Mac OS X 10.11 (El Capitan) | iteremoval_1.4.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/iteremoval |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/iteremoval |
Package Short Url | https://bioconductor.org/packages/iteremoval/ |
Package Downloads Report | Download Stats |
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