discordant

DOI: 10.18129/B9.bioc.discordant    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see discordant.

The Discordant Method: A Novel Approach for Differential Correlation

Bioconductor version: 3.9

Discordant is a method to determine differential correlation of molecular feature pairs from -omics data using mixture models. Algorithm is explained further in Siska et al.

Author: Charlotte Siska [cre,aut], Katerina Kechris [aut]

Maintainer: Charlotte Siska <siska.charlotte at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("discordant")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("discordant")

 

PDF	R Script	Discordant
PDF		Reference Manual
Text		NEWS

Details

biocViews	BiologicalQuestion, Genetics, ImmunoOncology, Microarray, RNASeq, Software, StatisticalMethod, mRNAMicroarray
Version	1.8.0
In Bioconductor since	BioC 3.5 (R-3.4) (2.5 years)
License	GPL (>= 2)
Depends	R (>= 3.4)
Imports	Biobase, stats, biwt, gtools, MASS, tools
LinkingTo
Suggests	BiocStyle, knitr
SystemRequirements
Enhances
URL	https://github.com/siskac/discordant
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	discordant_1.8.0.tar.gz
Windows Binary	discordant_1.8.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	discordant_1.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/discordant
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/discordant
Package Short Url	https://bioconductor.org/packages/discordant/
Package Downloads Report	Download Stats