attract

DOI: 10.18129/B9.bioc.attract    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see attract.

Methods to Find the Gene Expression Modules that Represent the Drivers of Kauffman's Attractor Landscape

Bioconductor version: 3.9

This package contains the functions to find the gene expression modules that represent the drivers of Kauffman's attractor landscape. The modules are the core attractor pathways that discriminate between different cell types of groups of interest. Each pathway has a set of synexpression groups, which show transcriptionally-coordinated changes in gene expression.

Author: Jessica Mar

Maintainer: Samuel Zimmerman <samuel.e.zimmerman at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("attract")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("attract")

 

PDF	R Script	Tutorial on How to Use the Functions in the \texttt{attract} Package
PDF		Reference Manual
Text		NEWS

Details

biocViews	GeneExpression, GeneSetEnrichment, ImmunoOncology, KEGG, Microarray, Pathways, RNASeq, Reactome, Software
Version	1.36.0
In Bioconductor since	BioC 2.7 (R-2.12) (9 years)
License	LGPL (>= 2.0)
Depends	R (>= 3.4.0), AnnotationDbi
Imports	Biobase, limma, cluster, GOstats, graphics, stats, reactome.db, KEGGREST, org.Hs.eg.db, utils, methods
LinkingTo
Suggests	illuminaHumanv1.db
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	attract_1.36.0.tar.gz
Windows Binary	attract_1.36.0.zip
Mac OS X 10.11 (El Capitan)	attract_1.36.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/attract
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/attract
Package Short Url	https://bioconductor.org/packages/attract/
Package Downloads Report	Download Stats