annotationTools

DOI: 10.18129/B9.bioc.annotationTools    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see annotationTools.

Annotate microarrays and perform cross-species gene expression analyses using flat file databases.

Bioconductor version: 3.9

Functions to annotate microarrays, find orthologs, and integrate heterogeneous gene expression profiles using annotation and other molecular biology information available as flat file database (plain text files).

Author: Alexandre Kuhn <alexandre.m.kuhn at gmail.com>

Maintainer: Alexandre Kuhn <alexandre.m.kuhn at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("annotationTools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("annotationTools")

 

PDF	R Script	annotationTools Overview
PDF		Reference Manual
Text		NEWS

Details

biocViews	Annotation, Microarray, Software
Version	1.58.0
In Bioconductor since	BioC 2.0 (R-2.5) (12.5 years)
License	GPL
Depends
Imports	Biobase, stats
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	DOQTL
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	annotationTools_1.58.0.tar.gz
Windows Binary	annotationTools_1.58.0.zip
Mac OS X 10.11 (El Capitan)	annotationTools_1.58.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/annotationTools
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/annotationTools
Package Short Url	https://bioconductor.org/packages/annotationTools/
Package Downloads Report	Download Stats