This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see VariantAnnotation.
Bioconductor version: 3.9
Annotate variants, compute amino acid coding changes, predict coding outcomes.
Author: Valerie Obenchain [aut, cre], Martin Morgan [aut], Michael Lawrence [aut], Stephanie Gogarten [ctb]
Maintainer: Valerie Obenchain <maintainer at bioconductor.org>
Citation (from within R,
enter citation("VariantAnnotation")
):
To install this package, start R (version "3.6") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("VariantAnnotation")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("VariantAnnotation")
R Script | 1. Introduction to VariantAnnotation | |
R Script | 2. Using filterVcf to Select Variants from VCF Files | |
Reference Manual | ||
Text | NEWS | |
Video | Reading VCF data |
Follow Installation instructions to use this package in your R session.
Source Package | VariantAnnotation_1.30.1.tar.gz |
Windows Binary | VariantAnnotation_1.30.1.zip |
Mac OS X 10.11 (El Capitan) | VariantAnnotation_1.30.1.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/VariantAnnotation |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/VariantAnnotation |
Package Short Url | https://bioconductor.org/packages/VariantAnnotation/ |
Package Downloads Report | Download Stats |
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