This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see TSSi.
Bioconductor version: 3.9
Identify and normalize transcription start sites in high-throughput sequencing data.
Author: Julian Gehring, Clemens Kreutz
Maintainer: Julian Gehring <jg-bioc at gmx.com>
Citation (from within R,
enter citation("TSSi")
):
To install this package, start R (version "3.6") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("TSSi")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TSSi")
R Script | Introduction to the TSSi package: Identification of Transcription Start Sites | |
Reference Manual |
biocViews | Genetics, Preprocessing, RNASeq, Sequencing, Software |
Version | 1.29.0 |
In Bioconductor since | BioC 2.9 (R-2.14) (8 years) |
License | GPL-3 |
Depends | R (>= 2.13.2) |
Imports | methods, BiocGenerics(>= 0.3.2), S4Vectors, Hmisc, minqa, stats, Biobase(>= 0.3.2), plyr, IRanges |
LinkingTo | |
Suggests | rtracklayer |
SystemRequirements | |
Enhances | parallel |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | TSSi_1.29.0.tar.gz |
Windows Binary | TSSi_1.29.0.zip |
Mac OS X 10.11 (El Capitan) | TSSi_1.29.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/TSSi |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TSSi |
Package Short Url | https://bioconductor.org/packages/TSSi/ |
Package Downloads Report | Download Stats |
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