This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see OncoScore.
Bioconductor version: 3.9
OncoScore is a tool to measure the association of genes to cancer based on citation frequencies in biomedical literature. The score is evaluated from PubMed literature by dynamically updatable web queries.
Author: Luca De Sano [aut], Carlo Gambacorti Passerini [ctb], Rocco Piazza [ctb], Daniele Ramazzotti [aut, cre], Roberta Spinelli [ctb]
Maintainer: Luca De Sano <luca.desano at gmail.com>
Citation (from within R,
enter citation("OncoScore")
):
To install this package, start R (version "3.6") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("OncoScore")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("OncoScore")
R Script | OncoScore | |
Reference Manual | ||
Text | NEWS | |
Text | LICENSE |
biocViews | BiomedicalInformatics, Software |
Version | 1.12.0 |
In Bioconductor since | BioC 3.3 (R-3.3) (3.5 years) |
License | file LICENSE |
Depends | R (>= 3.6) |
Imports | biomaRt, grDevices, graphics, utils, methods |
LinkingTo | |
Suggests | BiocGenerics, BiocStyle, knitr, testthat |
SystemRequirements | |
Enhances | |
URL | https://github.com/danro9685/OncoScore |
BugReports | https://github.com/danro9685/OncoScore |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | OncoScore_1.12.0.tar.gz |
Windows Binary | OncoScore_1.12.0.zip |
Mac OS X 10.11 (El Capitan) | OncoScore_1.12.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/OncoScore |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/OncoScore |
Package Short Url | https://bioconductor.org/packages/OncoScore/ |
Package Downloads Report | Download Stats |
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