OCplus

DOI: 10.18129/B9.bioc.OCplus    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see OCplus.

Operating characteristics plus sample size and local fdr for microarray experiments

Bioconductor version: 3.9

This package allows to characterize the operating characteristics of a microarray experiment, i.e. the trade-off between false discovery rate and the power to detect truly regulated genes. The package includes tools both for planned experiments (for sample size assessment) and for already collected data (identification of differentially expressed genes).

Author: Yudi Pawitan <Yudi.Pawitan at ki.se> and Alexander Ploner <Alexander.Ploner at ki.se>

Maintainer: Alexander Ploner <Alexander.Ploner at ki.se>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("OCplus")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("OCplus")

 

PDF	R Script	OCplus Introduction
PDF		Reference Manual

Details

biocViews	DifferentialExpression, Microarray, MultipleComparison, Software
Version	1.58.0
In Bioconductor since	BioC 1.8 (R-2.3) (13.5 years)
License	LGPL
Depends	R (>= 2.1.0)
Imports	multtest(>= 1.7.3), graphics, grDevices, stats, akima
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	OCplus_1.58.0.tar.gz
Windows Binary	OCplus_1.58.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	OCplus_1.58.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/OCplus
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/OCplus
Package Short Url	https://bioconductor.org/packages/OCplus/
Package Downloads Report	Download Stats