Imetagene

DOI: 10.18129/B9.bioc.Imetagene    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see Imetagene.

A graphical interface for the metagene package

Bioconductor version: 3.9

This package provide a graphical user interface to the metagene package. This will allow people with minimal R experience to easily complete metagene analysis.

Author: Audrey Lemacon <audrey.lemacon.1 at ulaval.ca>, Charles Joly Beauparlant <charles.joly-beauparlant at crchul.ulaval.ca>, Arnaud Droit <arnaud.droit at crchuq.ulaval.ca>

Maintainer: Audrey Lemacon <audrey.lemacon.1 at ulaval.ca>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Imetagene")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Imetagene")

 

HTML	R Script	Presentation of Imetagene
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	Alignment, ChIPSeq, Coverage, Genetics, MultipleComparison, Sequencing, Software
Version	1.14.0
In Bioconductor since	BioC 3.2 (R-3.2) (4 years)
License	Artistic-2.0 | file LICENSE
Depends	R (>= 3.2.0), metagene, shiny
Imports	d3heatmap, shinyBS, shinyFiles, shinythemes, ggplot2
LinkingTo
Suggests	knitr, BiocStyle, rmarkdown
SystemRequirements
Enhances
URL
BugReports	https://github.com/andronekomimi/Imetagene/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Imetagene_1.14.0.tar.gz
Windows Binary	Imetagene_1.14.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	Imetagene_1.14.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Imetagene
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Imetagene
Package Short Url	https://bioconductor.org/packages/Imetagene/
Package Downloads Report	Download Stats