ChromHeatMap

DOI: 10.18129/B9.bioc.ChromHeatMap    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see ChromHeatMap.

Heat map plotting by genome coordinate

Bioconductor version: 3.9

The ChromHeatMap package can be used to plot genome-wide data (e.g. expression, CGH, SNP) along each strand of a given chromosome as a heat map. The generated heat map can be used to interactively identify probes and genes of interest.

Author: Tim F. Rayner

Maintainer: Tim F. Rayner <tfrayner at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ChromHeatMap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ChromHeatMap")

 

PDF	R Script	Plotting expression data with ChromHeatMap
PDF		Reference Manual

Details

biocViews	Software, Visualization
Version	1.38.0
In Bioconductor since	BioC 2.5 (R-2.10) (10 years)
License	Artistic-2.0
Depends	R (>= 2.9.0), BiocGenerics(>= 0.3.2), annotate(>= 1.20.0), AnnotationDbi(>= 1.4.0)
Imports	Biobase(>= 2.17.8), graphics, grDevices, methods, stats, IRanges, rtracklayer, GenomicRanges
LinkingTo
Suggests	ALL, hgu95av2.db
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ChromHeatMap_1.38.0.tar.gz
Windows Binary	ChromHeatMap_1.38.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	ChromHeatMap_1.38.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ChromHeatMap
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ChromHeatMap
Package Short Url	https://bioconductor.org/packages/ChromHeatMap/
Package Downloads Report	Download Stats