CNORfeeder

DOI: 10.18129/B9.bioc.CNORfeeder    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see CNORfeeder.

Integration of CellNOptR to add missing links

Bioconductor version: 3.9

This package integrates literature-constrained and data-driven methods to infer signalling networks from perturbation experiments. It permits to extends a given network with links derived from the data via various inference methods and uses information on physical interactions of proteins to guide and validate the integration of links.

Author: F.Eduati

Maintainer: F.Eduati <eduati at ebi.ac.uk>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CNORfeeder")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CNORfeeder")

 

PDF	R Script	Main vignette:Playing with networks using CNORfeeder
PDF		Reference Manual
Text		NEWS

Details

biocViews	Bioinformatics, CellBasedAssays, CellBiology, ImmunoOncology, NetworkInference, Proteomics, Software
Version	1.24.0
In Bioconductor since	BioC 2.12 (R-3.0) (6.5 years)
License	GPL-3
Depends	R (>= 2.15.0), CellNOptR(>= 1.4.0), graph
Imports
LinkingTo
Suggests	minet, catnet, Rgraphviz, RUnit, BiocGenerics, igraph
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CNORfeeder_1.24.0.tar.gz
Windows Binary	CNORfeeder_1.24.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	CNORfeeder_1.24.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/CNORfeeder
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CNORfeeder
Package Short Url	https://bioconductor.org/packages/CNORfeeder/
Package Downloads Report	Download Stats