getKeggDefinitions {readat} | R Documentation |
Gets the KEGG definitions, modules, and pathways associated with SomaLogic aptamer IDs.
getKeggDefinitions(aptamerIds = NULL, simplify = FALSE) getKeggModules(aptamerIds = NULL, simplify = FALSE) getKeggPathways(aptamerIds = NULL, simplify = FALSE)
aptamerIds |
A character vector of SomaLogic aptamer IDs, or |
simplify |
Logical. Should the output be collapsed into a single data.frame? |
A list of data frames. The names of the list are the input aptamerIds, and the data frame associated with that element contains:
Character. UniProt ID for the protein target.
Character. KEGG ID for the gene that produces the target protein.
Character. Description corresponding to the KEGG ID.
Character. KEGG determination of the gene's locus.
# Each AptamerId may have one, many, or zero associated KEGG descriptions getKeggDefinitions(c("2278-61", "3505-6", "4916-2")) getKeggModules(c("2278-61", "3505-6", "4916-2")) getKeggPathways(c("2278-61", "3505-6", "4916-2")) # Get everything in the 1310 and 1129 panels. ## Not run: getKeggDefinitions() getKeggModules() getKeggPathways() ## End(Not run)