normalize {proBatch}R Documentation

Data normalization methods

Description

Data normalization methods

Arguments

data_matrix

features (in rows) vs samples (in columns) matrix, with feature IDs in rownames and file/sample names as colnames. Usually the log transformed version of the original data

sample_id_col

name of the column in sample_annotation file, where the filenames (colnames of the data matrix are found)

measure_col

if 'df_long' is among the parameters, it is the column with expression/abundance/intensity, otherwise, it is used internally for consistency


[Package proBatch version 1.0.0 Index]