getTransformations {flowWorkspace} | R Documentation |
Return a list of all the transformations or a transformation in a GatingHierarchy
getTransformations(x, ...) ## S3 method for class 'GatingHierarchy' getTransformations(x, channel = NULL, inverse = FALSE, only.function = TRUE, ...)
x |
A |
... |
other arguments
equal.spaced |
channel |
|
inverse |
|
only.function |
|
Returns a list of the transformations or a transformation in the flowJo workspace.
The list is of length L
, where L
is the number of distinct transformations applied to samples
in the flowJoWorkspace
. Each element of L
is itself a list
of length M
,
where M
is the number of parameters that were transformed for a sample or group of samples
in a flowJoWorkspace
. For example, if a sample has 10 parameters, and 5 are transformed during analysis,
using two different sets of transformations, then L will be of length 2, and each element of L will be of length 5.
The elements of L
represent channel- or parameter-specific transformation functions that map from raw intensity values
to channel-space used by flowJo.
lists of functions(or transform objects when only.function is FALSE), with each element of the list representing a transformation applied to a specific channel/parameter of a sample.
## Not run: #Assume gh is a GatingHierarchy getTransformations(gh); # return a list transformation functions getTransformations(gh, inverse = TRUE); # return a list inverse transformation functions getTransformations(gh, channel = "FL1-H") # only return the transfromation associated with given channel getTransformations(gh, channel = "FL1-H", only.function = FALSE) # return the entire transform object ## End(Not run)